PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022951594.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family Whirly
Protein Properties Length: 275aa    MW: 30565.9 Da    PI: 9.5778
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022951594.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly210.81.5e-65942311138
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     s+yk+kaal+++++ p+f+ +dsg++k++r+G+++l+la+a+++r+ydW++kq+f+ls te+++lv l+++esceffhdp +++s+eGkvrk lk
  XP_022951594.1  94 SIYKGKAALSIEPRPPEFTPIDSGAFKVSRQGFVMLQLAPAAGVRQYDWSRKQVFSLSLTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILK 188
                     7********************************************************************************************** PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                     vePlpdGsG+f+nlsv+n+l++++es+++P++kae++vl +++
  XP_022951594.1 189 VEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAF 231
                     ***************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MLRLQWLSSS LLPPLNPPEL CAQPCKNPRR CGFNSSRQLF TLTATRKPSP KCQYASWNTQ  60
QPAFEPASQT DSFSPQTSAG AAAALPPRFF VGHSIYKGKA ALSIEPRPPE FTPIDSGAFK  120
VSRQGFVMLQ LAPAAGVRQY DWSRKQVFSL SLTELGSLVA LGPRESCEFF HDPYKGKSDE  180
GKVRKILKVE PLPDGSGHFF NLSVQNKLIN VDESIYIPIT KAEYTVLVEA FKFILPHLMG  240
WHTIANTTMR PEDSSRVNNA NPRYGGESGG FEWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-113Whirly family protein