PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022950970.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 1003aa MW: 111829 Da PI: 4.8955

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022950970.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2e-18	38	84	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_022950970.1 38 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 84 799**************************9.**********986 PP
2	Myb_DNA-binding	66.8	3.9e-21	90	136	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v++v+++G++ W+tIa++++ gR +kqc++rw+++l XP_022950970.1 90 KGPWSKEEDEIIVELVQKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 136 79****************************.***********97 PP
3	Myb_DNA-binding	47.7	3.7e-15	142	184	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_022950970.1 142 KEAWTQEEEIALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 184 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence
MESDPALCTP LDAPGDSCQN IRSIHSRRTS GPTRRSTKGQ WTAEEDEILR KAVQRFKGKN 60 WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IVELVQKYGP KKWSTIAQHL 120 PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE IALIRAHQIY GNRWAELTKF LPGRTDNAIK 180 NHWNSSVKKK LDSYLASGLL EQYQPLHRAL QVGLPKNSSS RVQSSIDDSS LRGTETEDIS 240 EVSQTSAIVA CSTTVPRTEE ECQLGEAAFL KEEPISTPHC PEQYNSSLDN ITFSIPEMFG 300 ELDCYVKPPD QNFSQDCRTS PTGDNRYNLY ELPNISSLEL GRELSQSQAI GSQEVENVPH 360 QTSAGLNAST DENMARGSDR SEQMLISDYE CCRVLFSDGI NNESFPSENT PDASNMVELS 420 GYAHPLHCQS LSIEMQESRR NLSMQSYHHS RTDVLDNSSS QPFLAPLLVS ANDDTYVYTS 480 EASHLFATLE RELVANEHDG FIYTNESAES PREDGTKDAD LQKQQGSNDP SKLVPVNTFS 540 SEPKTAQSFP SFSERENTQS DQQDVGALCY EPPRFPSLDV PFLSCDLAAP STSEMQQEYS 600 PLGIRQLMMS SMNCLTPFRL WNSPSRDDSP DAVLKSAAKT FTNTPSILKK RHREFFSPLS 660 EKQRDKKQEI DIGISRTSYP TSNSRDSEDK ENIIPVEEGR QEKQSDGSNI LLSCSFQENK 720 RQELDNAVKT EGVDTVGQTV QPPSRILVEC DMNDSLLYST DHDGVRADTN RGSSDEISES 780 QCRTSTALQD LDFPSKLSDD QCTRANCSIA NETSHGRYPP TAPPEIIGDD ASKEPSIETL 840 FGGTPFKRSI ESPSAWKSPW FINSFLFGSR MDSDVAMEEV GYFMSPGDRS YDAIGLMKQV 900 GEHTAAACAN AQEVLGDETP QSLLKGERRK YGNRIKEKSP ATNARQGVAH STLAPDILKE 960 RRILDFSECG TPGKGTENGK SSSASATARS FSSPSSYLLK GCR

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence

MESDPALCTP LDAPGDSCQN IRSIHSRRTS GPTRRSTKGQ WTAEEDEILR KAVQRFKGKN  60
WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IVELVQKYGP KKWSTIAQHL  120
PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE IALIRAHQIY GNRWAELTKF LPGRTDNAIK  180
NHWNSSVKKK LDSYLASGLL EQYQPLHRAL QVGLPKNSSS RVQSSIDDSS LRGTETEDIS  240
EVSQTSAIVA CSTTVPRTEE ECQLGEAAFL KEEPISTPHC PEQYNSSLDN ITFSIPEMFG  300
ELDCYVKPPD QNFSQDCRTS PTGDNRYNLY ELPNISSLEL GRELSQSQAI GSQEVENVPH  360
QTSAGLNAST DENMARGSDR SEQMLISDYE CCRVLFSDGI NNESFPSENT PDASNMVELS  420
GYAHPLHCQS LSIEMQESRR NLSMQSYHHS RTDVLDNSSS QPFLAPLLVS ANDDTYVYTS  480
EASHLFATLE RELVANEHDG FIYTNESAES PREDGTKDAD LQKQQGSNDP SKLVPVNTFS  540
SEPKTAQSFP SFSERENTQS DQQDVGALCY EPPRFPSLDV PFLSCDLAAP STSEMQQEYS  600
PLGIRQLMMS SMNCLTPFRL WNSPSRDDSP DAVLKSAAKT FTNTPSILKK RHREFFSPLS  660
EKQRDKKQEI DIGISRTSYP TSNSRDSEDK ENIIPVEEGR QEKQSDGSNI LLSCSFQENK  720
RQELDNAVKT EGVDTVGQTV QPPSRILVEC DMNDSLLYST DHDGVRADTN RGSSDEISES  780
QCRTSTALQD LDFPSKLSDD QCTRANCSIA NETSHGRYPP TAPPEIIGDD ASKEPSIETL  840
FGGTPFKRSI ESPSAWKSPW FINSFLFGSR MDSDVAMEEV GYFMSPGDRS YDAIGLMKQV  900
GEHTAAACAN AQEVLGDETP QSLLKGERRK YGNRIKEKSP ATNARQGVAH STLAPDILKE  960
RRILDFSECG TPGKGTENGK SSSASATARS FSSPSSYLLK GCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	0.0	MYB family protein