PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022950792.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 465aa MW: 50873.1 Da PI: 9.7402

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022950792.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022950792.1 62 FVCEICNKGFQRDQNLQLHRRGH 84 89*******************88 PP
2	zf-C2H2	12.2	0.00054	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_022950792.1 139 WKCDKCSKKYAVQSDWKAHSKTC 161 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MSSNPFSLLS STTTPFAPHQ DANPKSKPST ATKKKRNLPG TPDPDAEVIA LSPKSLMATN 60 RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTNKEMIK KKVYICPEKT CVHHDPSRAL 120 GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRKDSF 180 ITHRAFCDAL AEESARITTI SATNILNNLR NDSIVLHQQE QNNLESLGDV PGLSQFSNSD 240 NFLRDFEEHQ HKNRSPLSLW LNQASVDNAI NNNNNISHFF GASSSSSNLF GSMTESGLSV 300 LPLIEKEDVD NKGSLSKATA AAALLGQSSQ SFVSSSPMSA TALLQKAALM GSTRSSNNNN 360 SPLFGAGAFG VMSSSSSSLN SFNKSRSPTM ADSVQMVGNN SDLSSDCLNQ LLLPPNDTNK 420 MRSSGQTRDF LGVGGGEPPR PPFLPPELAK FAAINSTMGL SQFNH

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MSSNPFSLLS STTTPFAPHQ DANPKSKPST ATKKKRNLPG TPDPDAEVIA LSPKSLMATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRTNKEMIK KKVYICPEKT CVHHDPSRAL  120
GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRKDSF  180
ITHRAFCDAL AEESARITTI SATNILNNLR NDSIVLHQQE QNNLESLGDV PGLSQFSNSD  240
NFLRDFEEHQ HKNRSPLSLW LNQASVDNAI NNNNNISHFF GASSSSSNLF GSMTESGLSV  300
LPLIEKEDVD NKGSLSKATA AAALLGQSSQ SFVSSSPMSA TALLQKAALM GSTRSSNNNN  360
SPLFGAGAFG VMSSSSSSLN SFNKSRSPTM ADSVQMVGNN SDLSSDCLNQ LLLPPNDTNK  420
MRSSGQTRDF LGVGGGEPPR PPFLPPELAK FAAINSTMGL SQFNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-103	C2H2 family protein