PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022950771.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 393aa    MW: 45276.7 Da    PI: 7.3781
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022950771.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS393.22.8e-120273921373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                     +++lL++cA+++s++d+  a++lL+ ls ++sp+gd+++Rl +yft  L++r+ +s s+ +  lp+ ++ ++++++ +++  l +++++P+++f+
  XP_022950771.1  27 MRQLLIRCAHFISQSDFLSAHRLLSILSSNSSPYGDATERLLHYFTTSLSHRIPSSNSSSVLPLPSLSSIDDEQQKLTQSCYLsLNQITPFIRFT 121
                     589****************************************************77776666666655544444444443336*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vak.r 185
                     hltaNqaIlea+  e  +H++Dfdi++G+QWp+L+qaLa+R  ++p+lRi ++g+    + + l++tg+rL+kfA++lg++f+f++l     + +
  XP_022950771.1 122 HLTANQAILEAIV-EGGIHVVDFDIMHGVQWPPLMQALAER-FPSPMLRISAIGR----DLNFLHKTGDRLSKFAHSLGLRFQFHPLlllN-DhD 209
                     ***********96.678***********************9.788**********....9**************************97633.347 PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      + l + +L + p+Eala n+vl lh+l++e        + +L+ +k l+Pkvv+++e+ea+ n++ F++rfleal++ys +fdslea+lp++s+
  XP_022950771.1 210 HHRLIPAALTLFPDEALAFNCVLYLHKLVKE------DLRVLLHKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATLPPNSR 298
                     88899***********************933......34569***************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     er  vE++++grei +vv+ eg++r++r e++e+W+ +l++ GF+++pls +a +qaklllr ++ s+gy+++  ++sl+lgW++rpL+svS+W
  XP_022950771.1 299 ERLAVEQVWFGREIDDVVSREGNKRKQRYERYESWETMLKSLGFSNIPLSPFALSQAKLLLRLHYpSEGYHLQILHDSLFLGWQNRPLFSVSSW 392
                     ********************************************************************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    
MASHHYEHHH HHQEEETTSS SNNSLQMRQL LIRCAHFISQ SDFLSAHRLL SILSSNSSPY  60
GDATERLLHY FTTSLSHRIP SSNSSSVLPL PSLSSIDDEQ QKLTQSCYLS LNQITPFIRF  120
THLTANQAIL EAIVEGGIHV VDFDIMHGVQ WPPLMQALAE RFPSPMLRIS AIGRDLNFLH  180
KTGDRLSKFA HSLGLRFQFH PLLLLNDHDH HRLIPAALTL FPDEALAFNC VLYLHKLVKE  240
DLRVLLHKIK ALNPKVVTIA EKEANFNHPL FMQRFLEALN HYSLIFDSLE ATLPPNSRER  300
LAVEQVWFGR EIDDVVSREG NKRKQRYERY ESWETMLKSL GFSNIPLSPF ALSQAKLLLR  360
LHYPSEGYHL QILHDSLFLG WQNRPLFSVS SWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-124GRAS family protein