PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022950759.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 628aa MW: 69173.6 Da PI: 7.6573

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022950759.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51	3.5e-16	290	349	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_022950759.1 290 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 349 78*****************988886678446***********************98 PP
2	AP2	46.9	6.6e-15	392	443	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_022950759.1 392 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 443 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MNNVNGNNCD WLGFSVSPNV SMELSSSSAT AVSSSIPANL FHSPSQFNYG ICYGVDGENG 60 GFYSPLSAMP LKSDGSFCSM ESLSRQHPQV ASSSTPKLED FFGGATMGSH HYESNGREAM 120 ALSLDSIFCH QNPTHEPNNQ PFAHFSSLRS REGMLQDSKV ILPDGCNLQQ QQHPPAVIET 180 KNSGLNWAVP RNYAVANNGS FEQKMVSFMS ENGGESGPIN AMAYGDLHSL SLSMTMSPSS 240 QSSCVTATQH ASPALADCSA VDTKKRGHEK LDQKQIVHRK SLDTFGQRTS QYRGVTRHRW 300 TGRYEAHLWD NSCKKEGQSR KGRQVYLGGY DMEEKAARAY DLAALKYWGP STHINSPVEN 360 YQKELEEMKN MSRQEYVAHL RRRSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY 420 LGTFSTQEEA AEAYDIAAIK FRGMNAVTNF NITRYDVERI IASNTLLSGD LAKRKQQPEF 480 DNESLRQTPP THNSNSEALH LPTQSNQSES EWKMALYQSS QQLIPKPRLP SAITDDGSQL 540 GVEDSARMGA HFSNASSIVT SCSFSSSREE SPDKTSLSMV FGMPQSTSKP FATSGSNMNS 600 SSWIASAQQL RAANCMSQLP VFAAWSDS

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MNNVNGNNCD WLGFSVSPNV SMELSSSSAT AVSSSIPANL FHSPSQFNYG ICYGVDGENG  60
GFYSPLSAMP LKSDGSFCSM ESLSRQHPQV ASSSTPKLED FFGGATMGSH HYESNGREAM  120
ALSLDSIFCH QNPTHEPNNQ PFAHFSSLRS REGMLQDSKV ILPDGCNLQQ QQHPPAVIET  180
KNSGLNWAVP RNYAVANNGS FEQKMVSFMS ENGGESGPIN AMAYGDLHSL SLSMTMSPSS  240
QSSCVTATQH ASPALADCSA VDTKKRGHEK LDQKQIVHRK SLDTFGQRTS QYRGVTRHRW  300
TGRYEAHLWD NSCKKEGQSR KGRQVYLGGY DMEEKAARAY DLAALKYWGP STHINSPVEN  360
YQKELEEMKN MSRQEYVAHL RRRSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY  420
LGTFSTQEEA AEAYDIAAIK FRGMNAVTNF NITRYDVERI IASNTLLSGD LAKRKQQPEF  480
DNESLRQTPP THNSNSEALH LPTQSNQSES EWKMALYQSS QQLIPKPRLP SAITDDGSQL  540
GVEDSARMGA HFSNASSIVT SCSFSSSREE SPDKTSLSMV FGMPQSTSKP FATSGSNMNS  600
SSWIASAQQL RAANCMSQLP VFAAWSDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-148	AP2 family protein