PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022950662.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 527aa MW: 55664.6 Da PI: 8.5349

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022950662.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022950662.1 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP
2	zf-C2H2	11.1	0.0012	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_022950662.1 132 WKCDKCSKKYAVQSDWKAHSKIC 154 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MPADEKDSSM ASGKASVSSP GAKSATKKKR NLPGMPDPEA EVIALSPKTL FATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKKVYVCP ESSCVHHDPS RALGDLTGIK 120 KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSWR DSFIRHRAFC 180 DALAKESSKA QPMPVDKPDL HSDPDGDSQS AAVKPNLEPS PPPPPPPPPP SSPPVSSPPQ 240 STGELITALP VPSQELSENP SQCTEEAPGT PGLSRSSSSS SKSASSNSSS RSSGFAGLFA 300 SSMTSRSLQP PRPPGFTDLM QAMVCSDRSS DYASSSTIEP TSLSLAMNQG PLIFGTASQD 360 LRQYTPTPQP AMSATALLQK AAQIGATASN ASLLRGLGLV SSSSSLAAQQ ESLPWNHQSH 420 GQPDGISIAA GLGLGRPCDG NSGLKELMMG NHSMFPPKHT TLDFLGLGMA ADGSPNTGLA 480 ALITSVGSGV DIGVTTLSYG GSGVDVGVTT LSYSGSGDIP EKKTETE

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MPADEKDSSM ASGKASVSSP GAKSATKKKR NLPGMPDPEA EVIALSPKTL FATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EVKKKVYVCP ESSCVHHDPS RALGDLTGIK  120
KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSWR DSFIRHRAFC  180
DALAKESSKA QPMPVDKPDL HSDPDGDSQS AAVKPNLEPS PPPPPPPPPP SSPPVSSPPQ  240
STGELITALP VPSQELSENP SQCTEEAPGT PGLSRSSSSS SKSASSNSSS RSSGFAGLFA  300
SSMTSRSLQP PRPPGFTDLM QAMVCSDRSS DYASSSTIEP TSLSLAMNQG PLIFGTASQD  360
LRQYTPTPQP AMSATALLQK AAQIGATASN ASLLRGLGLV SSSSSLAAQQ ESLPWNHQSH  420
GQPDGISIAA GLGLGRPCDG NSGLKELMMG NHSMFPPKHT TLDFLGLGMA ADGSPNTGLA  480
ALITSVGSGV DIGVTTLSYG GSGVDVGVTT LSYSGSGDIP EKKTETE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-103	C2H2 family protein