PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022950343.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 555aa    MW: 61912.4 Da    PI: 6.6677
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022950343.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.71.7e-921545522373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalkl..fsevsPilk 92 
                     ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl++ f++AL +r ++    ++ +++++s+  +++ ++++++ + l  f++++P+++
  XP_022950343.1 154 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALVTRATNtGNCKILASITTSAFFSSSlTTHTFSLMDLaaFVDLTPWHR 248
                     79***************************************************943345666666665555553333333344456********* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnv 180
                     f++ +aN aIl+a++g ++vH++Df++++++Q p+L++a+a+R e pp l++T+v+++++         + ++ e+g +L +fA++ +v++ef+v
  XP_022950343.1 249 FGFTAANAAILDAIDGYSAVHVVDFSLMHCMQIPTLIDAIATRFEVPPLLKLTTVAAAAAAvkdappmLELSYDELGAKLVNFARSRNVSMEFRV 343
                     *********************************************************88878999877788899********************* PP

            GRAS 181 l...vakrledleleeLrvkp.......gEalaVnlvlqlhrll............desvsles.erdevLklvkslsPkvvvvveqeadhnses 252
                     +   +++ +++l +e++rv++       + al+ n+++ lh+++            d    ++s  r+ +Lk+++sl P++v++ve++ad +s++
  XP_022950343.1 344 VpscHTDGFANL-IEQIRVQHliygpenNGALVFNCHMLLHYIPeetlnpnpspsfD----MSSsVRSMFLKTIRSLDPTIVILVEEDADFTSTE 433
                     999844444444.55555555555558799**************5555555533222....3334678*************************** PP

            GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                     ++ r+ +a++y +  +ds+++ lpr s++r ++E+  + ++i+nv+a+eg +r+er e +++W +r+++a F+ +p++++a++++k++l +++  
  XP_022950343.1 434 LVSRLRSAFNYLWIPYDSMDSFLPRSSKQREWYEAD-ICWKIENVIAHEGIQRVERLEPKGRWVQRMRNAKFRGAPFGDEAVSEVKTMLDEHA-A 526
                     ************************************.********************************************************.9 PP

            GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373
                     g+ +++e++ lvl+Wk++ +v+++aW
  XP_022950343.1 527 GWGLKKEDDHLVLTWKGHDVVFATAW 552
                     99************************ PP
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    
MAWHGMALHC MAWHGPLSVV LGYANFVFLP LCFRLISLCP RSPPPPPPPP PPPPPPPPLV  60
VSFSLLSVSE FPPFSFPFWL YLPFLSSLRD AIQAHTPRFH HTILNSFPDI SMSNKTQITT  120
TSGHQLRRRP WPGLLFPCSS KALGTCFGDA NCMEQLLVHC ANAIESNDAT LAQQILWVLN  180
NIAPPDGDSN QRLTSAFLRA LVTRATNTGN CKILASITTS AFFSSSLTTH TFSLMDLAAF  240
VDLTPWHRFG FTAANAAILD AIDGYSAVHV VDFSLMHCMQ IPTLIDAIAT RFEVPPLLKL  300
TTVAAAAAAV KDAPPMLELS YDELGAKLVN FARSRNVSME FRVVPSCHTD GFANLIEQIR  360
VQHLIYGPEN NGALVFNCHM LLHYIPEETL NPNPSPSFDM SSSVRSMFLK TIRSLDPTIV  420
ILVEEDADFT STELVSRLRS AFNYLWIPYD SMDSFLPRSS KQREWYEADI CWKIENVIAH  480
EGIQRVERLE PKGRWVQRMR NAKFRGAPFG DEAVSEVKTM LDEHAAGWGL KKEDDHLVLT  540
WKGHDVVFAT AWVPC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-161GRAS family protein