PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022950169.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 918aa MW: 103735 Da PI: 5.9846

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022950169.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.0006	789	811	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H XP_022950169.1 789 YKCETCNKVFRSYQALGGHRASH 811 9***********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence
MAAFIVDHDL QKPNLKHFCK ICKKGFGCGR ALGGHMRAHG IADDSTSPHT IDDDDHVSND 60 WDDTHHNKSN LGPTNRRMYA LRTNPNRLKT CRVCENCGKE FLSWKSFLEH GKCTTTSDDL 120 DSLLSSPPCS DDDDDDDDDD DECSGAVRRG SGNHSNNNWL KRKRSLRVKV GSPASNEDED 180 LANCLIMLSN GAVEPMFEED EAEVEVEAEA EAEESCASAS KEDHHLILHH NNNHTNIRKP 240 INFIPPLSYR LPDQDKPKAA APKGMFECKA CKKVFNSHQA LGGHRASHKK DSFFPTKPNN 300 NSYELGSSTM ASSSKRKTKV HECSICHRIF SSGQALGGHK RCHWITSNAA AEAPPPPSIA 360 KIHQFHDHRV PPPPFDSNST VVLPLDLKLD LNLPALADEV RRPAFEVSTE IYLQSWICKN 420 NKVDENDSRE QRRRRQQQQH QNNNENKVRP VIIAGWFEVG KGLKNSENRN KVNTVLGLLK 480 VLAEDCLSPT FQFTLFLSLS RSKEREEGGE DSYSVLFYLF FFFFFFFFFF FFFVXAMDRH 540 KCRLCFRSFS NGRALGGHMR SHMVNLPLPP KPEDPPSPPL LPPPSHLHLS EDAADSASFL 600 SSPSSSEGDA EEKGLSYGLR ENPKRSIRIG DPEFSFAIDA GSVVLQDRES ETESSKNPTR 660 RRSKRTRKPD HNHHHHHHYN GFKRLNQPES WTETEPVSSI SGSTTEEDVA FWLMMLSRDK 720 WTKHQSGYGR RREVEDDDDD DDDDDDGDDD GDDDDDEEEE EEEEMEESME ETDDSEAVKL 780 TRNRNRGNYK CETCNKVFRS YQALGGHRAS HKKIKVSVNY ENPQLTTEQE NAGTTTMAER 840 KIHECPVCFR VFSSGQALGG HKRSHVTGFS SANSRIPAKK FSDSLIDLNL PAPFEEDDLS 900 QIEHSAVSDA DFVNAIRQ

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence

MAAFIVDHDL QKPNLKHFCK ICKKGFGCGR ALGGHMRAHG IADDSTSPHT IDDDDHVSND  60
WDDTHHNKSN LGPTNRRMYA LRTNPNRLKT CRVCENCGKE FLSWKSFLEH GKCTTTSDDL  120
DSLLSSPPCS DDDDDDDDDD DECSGAVRRG SGNHSNNNWL KRKRSLRVKV GSPASNEDED  180
LANCLIMLSN GAVEPMFEED EAEVEVEAEA EAEESCASAS KEDHHLILHH NNNHTNIRKP  240
INFIPPLSYR LPDQDKPKAA APKGMFECKA CKKVFNSHQA LGGHRASHKK DSFFPTKPNN  300
NSYELGSSTM ASSSKRKTKV HECSICHRIF SSGQALGGHK RCHWITSNAA AEAPPPPSIA  360
KIHQFHDHRV PPPPFDSNST VVLPLDLKLD LNLPALADEV RRPAFEVSTE IYLQSWICKN  420
NKVDENDSRE QRRRRQQQQH QNNNENKVRP VIIAGWFEVG KGLKNSENRN KVNTVLGLLK  480
VLAEDCLSPT FQFTLFLSLS RSKEREEGGE DSYSVLFYLF FFFFFFFFFF FFFVXAMDRH  540
KCRLCFRSFS NGRALGGHMR SHMVNLPLPP KPEDPPSPPL LPPPSHLHLS EDAADSASFL  600
SSPSSSEGDA EEKGLSYGLR ENPKRSIRIG DPEFSFAIDA GSVVLQDRES ETESSKNPTR  660
RRSKRTRKPD HNHHHHHHYN GFKRLNQPES WTETEPVSSI SGSTTEEDVA FWLMMLSRDK  720
WTKHQSGYGR RREVEDDDDD DDDDDDGDDD GDDDDDEEEE EEEEMEESME ETDDSEAVKL  780
TRNRNRGNYK CETCNKVFRS YQALGGHRAS HKKIKVSVNY ENPQLTTEQE NAGTTTMAER  840
KIHECPVCFR VFSSGQALGG HKRSHVTGFS SANSRIPAKK FSDSLIDLNL PAPFEEDDLS  900
QIEHSAVSDA DFVNAIRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-51	C2H2 family protein