PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022949982.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 722aa MW: 79820.2 Da PI: 8.3498

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022949982.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.4e-07	157	178	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++fa+ G C+ G +Ck++H XP_022949982.1 157 VICKYFAA-GSCRNGKNCKYSHH 178 589999.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MGRSRSRSWS RSPPHGNKRD SGFHDRNRNR TRVSTQLCRD FTSGRCRRGN GCQFLHQDDQ 60 NLDDSLENRN RKGGRSFRST SHDFKDHPRS GRSAAHCTDF VKGRCHRGAS CTFSHDSAFH 120 ELSRDSPNDI SRDRKNDQSK EAYFSRGERE PCSSSLVICK YFAAGSCRNG KNCKYSHHSQ 180 PRASPERKSS TDKWEHAQCS DGREQSWDGL KSSELASGSD FTQLIEDKKE QTASEEPRYT 240 WPSDQKCDHG LNNESKTRWD RAVDIKTVRS NKNDAIPSKA ENAGGCTGSS DPRGHRKWPS 300 DDMEMSPDWH YPVQPSNHVV KGDCNVMQDS GSQTSTALAI SHAIVQEALA KNQDIAIEPI 360 VVDITRFQKN QTLTKDDTIA SASNDNITID RTAASHAEGN PSGNVGLGQR MAYHSDHPDG 420 TVTNPKISDG NFRVKLQKKD ESMPGINSGT TVTPNIVTND QIRQITDLSA SLAQYFGNAQ 480 PLPQLYASLN THSVSEAPSF PYSDAPMGAL GASMKTAPVI ESSKQHDSAL CNSLQLKKIE 540 VTKTPQKSTT EVKGEVQIPN LPLSSGPCGI SAEETLHGKP TADGDAIKEK NGDGDNENKT 600 GPATNEDSQK IDTTENANGN DEVHDKKKSK DTKGIRAFKF ALVEFVKELL KPTWKEGHIS 660 KDVYKTIVKK VVDKVTGSLQ DGHIPQTQEK IDHYLSFSKS KLTKLVQVMH ILKIQLVATI 720 TF

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MGRSRSRSWS RSPPHGNKRD SGFHDRNRNR TRVSTQLCRD FTSGRCRRGN GCQFLHQDDQ  60
NLDDSLENRN RKGGRSFRST SHDFKDHPRS GRSAAHCTDF VKGRCHRGAS CTFSHDSAFH  120
ELSRDSPNDI SRDRKNDQSK EAYFSRGERE PCSSSLVICK YFAAGSCRNG KNCKYSHHSQ  180
PRASPERKSS TDKWEHAQCS DGREQSWDGL KSSELASGSD FTQLIEDKKE QTASEEPRYT  240
WPSDQKCDHG LNNESKTRWD RAVDIKTVRS NKNDAIPSKA ENAGGCTGSS DPRGHRKWPS  300
DDMEMSPDWH YPVQPSNHVV KGDCNVMQDS GSQTSTALAI SHAIVQEALA KNQDIAIEPI  360
VVDITRFQKN QTLTKDDTIA SASNDNITID RTAASHAEGN PSGNVGLGQR MAYHSDHPDG  420
TVTNPKISDG NFRVKLQKKD ESMPGINSGT TVTPNIVTND QIRQITDLSA SLAQYFGNAQ  480
PLPQLYASLN THSVSEAPSF PYSDAPMGAL GASMKTAPVI ESSKQHDSAL CNSLQLKKIE  540
VTKTPQKSTT EVKGEVQIPN LPLSSGPCGI SAEETLHGKP TADGDAIKEK NGDGDNENKT  600
GPATNEDSQK IDTTENANGN DEVHDKKKSK DTKGIRAFKF ALVEFVKELL KPTWKEGHIS  660
KDVYKTIVKK VVDKVTGSLQ DGHIPQTQEK IDHYLSFSKS KLTKLVQVMH ILKIQLVATI  720
TF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	8e-09	C3H family protein