PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022949981.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 746aa MW: 82589.4 Da PI: 8.2497

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022949981.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.5e-07	181	202	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++fa+ G C+ G +Ck++H XP_022949981.1 181 VICKYFAA-GSCRNGKNCKYSHH 202 589999.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence
MCCEVLQLQS LGLSRYYSPC PQRDQGRSRS RSWSRSPPHG NKRDSGFHDR NRNRTRVSTQ 60 LCRDFTSGRC RRGNGCQFLH QDDQNLDDSL ENRNRKGGRS FRSTSHDFKD HPRSGRSAAH 120 CTDFVKGRCH RGASCTFSHD SAFHELSRDS PNDISRDRKN DQSKEAYFSR GEREPCSSSL 180 VICKYFAAGS CRNGKNCKYS HHSQPRASPE RKSSTDKWEH AQCSDGREQS WDGLKSSELA 240 SGSDFTQLIE DKKEQTASEE PRYTWPSDQK CDHGLNNESK TRWDRAVDIK TVRSNKNDAI 300 PSKAENAGGC TGSSDPRGHR KWPSDDMEMS PDWHYPVQPS NHVVKGDCNV MQDSGSQTST 360 ALAISHAIVQ EALAKNQDIA IEPIVVDITR FQKNQTLTKD DTIASASNDN ITIDRTAASH 420 AEGNPSGNVG LGQRMAYHSD HPDGTVTNPK ISDGNFRVKL QKKDESMPGI NSGTTVTPNI 480 VTNDQIRQIT DLSASLAQYF GNAQPLPQLY ASLNTHSVSE APSFPYSDAP MGALGASMKT 540 APVIESSKQH DSALCNSLQL KKIEVTKTPQ KSTTEVKGEV QIPNLPLSSG PCGISAEETL 600 HGKPTADGDA IKEKNGDGDN ENKTGPATNE DSQKIDTTEN ANGNDEVHDK KKSKDTKGIR 660 AFKFALVEFV KELLKPTWKE GHISKDVYKT IVKKVVDKVT GSLQDGHIPQ TQEKIDHYLS 720 FSKSKLTKLV QVMHILKIQL VATITF

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence

MCCEVLQLQS LGLSRYYSPC PQRDQGRSRS RSWSRSPPHG NKRDSGFHDR NRNRTRVSTQ  60
LCRDFTSGRC RRGNGCQFLH QDDQNLDDSL ENRNRKGGRS FRSTSHDFKD HPRSGRSAAH  120
CTDFVKGRCH RGASCTFSHD SAFHELSRDS PNDISRDRKN DQSKEAYFSR GEREPCSSSL  180
VICKYFAAGS CRNGKNCKYS HHSQPRASPE RKSSTDKWEH AQCSDGREQS WDGLKSSELA  240
SGSDFTQLIE DKKEQTASEE PRYTWPSDQK CDHGLNNESK TRWDRAVDIK TVRSNKNDAI  300
PSKAENAGGC TGSSDPRGHR KWPSDDMEMS PDWHYPVQPS NHVVKGDCNV MQDSGSQTST  360
ALAISHAIVQ EALAKNQDIA IEPIVVDITR FQKNQTLTKD DTIASASNDN ITIDRTAASH  420
AEGNPSGNVG LGQRMAYHSD HPDGTVTNPK ISDGNFRVKL QKKDESMPGI NSGTTVTPNI  480
VTNDQIRQIT DLSASLAQYF GNAQPLPQLY ASLNTHSVSE APSFPYSDAP MGALGASMKT  540
APVIESSKQH DSALCNSLQL KKIEVTKTPQ KSTTEVKGEV QIPNLPLSSG PCGISAEETL  600
HGKPTADGDA IKEKNGDGDN ENKTGPATNE DSQKIDTTEN ANGNDEVHDK KKSKDTKGIR  660
AFKFALVEFV KELLKPTWKE GHISKDVYKT IVKKVVDKVT GSLQDGHIPQ TQEKIDHYLS  720
FSKSKLTKLV QVMHILKIQL VATITF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	8e-09	C3H family protein