PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022949979.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 863aa MW: 95420 Da PI: 7.8471

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022949979.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	298	319	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++fa+ G C+ G +Ck++H XP_022949979.1 298 VICKYFAA-GSCRNGKNCKYSHH 319 589999.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 863 aa Download sequence
MRKSLRVMSG SGRKHSSKWD LREDSHFEAD SVQDHSWPGK ESGPGWISAE IASDDGSKWS 60 GMATTNTVSK STQDWGLLSE EEPLPGTRAS LKEDRPNKGY NKNMDGTAEC DADKSYDTRM 120 SPDLDGRRSH GSNLSDRNDW IGGRSRSRSW SRSPPHGNKR DSGFHDRNRN RTRVSTQLCR 180 DFTSGRCRRG NGCQFLHQDD QNLDDSLENR NRKGGRSFRS TSHDFKDHPR SGRSAAHCTD 240 FVKGRCHRGA SCTFSHDSAF HELSRDSPND ISRDRKNDQS KEAYFSRGER EPCSSSLVIC 300 KYFAAGSCRN GKNCKYSHHS QPRASPERKS STDKWEHAQC SDGREQSWDG LKSSELASGS 360 DFTQLIEDKK EQTASEEPRY TWPSDQKCDH GLNNESKTRW DRAVDIKTVR SNKNDAIPSK 420 AENAGGCTGS SDPRGHRKWP SDDMEMSPDW HYPVQPSNHV VKGDCNVMQD SGSQTSTALA 480 ISHAIVQEAL AKNQDIAIEP IVVDITRFQK NQTLTKDDTI ASASNDNITI DRTAASHAEG 540 NPSGNVGLGQ RMAYHSDHPD GTVTNPKISD GNFRVKLQKK DESMPGINSG TTVTPNIVTN 600 DQIRQITDLS ASLAQYFGNA QPLPQLYASL NTHSVSEAPS FPYSDAPMGA LGASMKTAPV 660 IESSKQHDSA LCNSLQLKKI EVTKTPQKST TEVKGEVQIP NLPLSSGPCG ISAEETLHGK 720 PTADGDAIKE KNGDGDNENK TGPATNEDSQ KIDTTENANG NDEVHDKKKS KDTKGIRAFK 780 FALVEFVKEL LKPTWKEGHI SKDVYKTIVK KVVDKVTGSL QDGHIPQTQE KIDHYLSFSK 840 SKLTKLVQVM HILKIQLVAT ITF

Sequence ? help Back to Top

Protein Sequence Length: 863 aa Download sequence

MRKSLRVMSG SGRKHSSKWD LREDSHFEAD SVQDHSWPGK ESGPGWISAE IASDDGSKWS  60
GMATTNTVSK STQDWGLLSE EEPLPGTRAS LKEDRPNKGY NKNMDGTAEC DADKSYDTRM  120
SPDLDGRRSH GSNLSDRNDW IGGRSRSRSW SRSPPHGNKR DSGFHDRNRN RTRVSTQLCR  180
DFTSGRCRRG NGCQFLHQDD QNLDDSLENR NRKGGRSFRS TSHDFKDHPR SGRSAAHCTD  240
FVKGRCHRGA SCTFSHDSAF HELSRDSPND ISRDRKNDQS KEAYFSRGER EPCSSSLVIC  300
KYFAAGSCRN GKNCKYSHHS QPRASPERKS STDKWEHAQC SDGREQSWDG LKSSELASGS  360
DFTQLIEDKK EQTASEEPRY TWPSDQKCDH GLNNESKTRW DRAVDIKTVR SNKNDAIPSK  420
AENAGGCTGS SDPRGHRKWP SDDMEMSPDW HYPVQPSNHV VKGDCNVMQD SGSQTSTALA  480
ISHAIVQEAL AKNQDIAIEP IVVDITRFQK NQTLTKDDTI ASASNDNITI DRTAASHAEG  540
NPSGNVGLGQ RMAYHSDHPD GTVTNPKISD GNFRVKLQKK DESMPGINSG TTVTPNIVTN  600
DQIRQITDLS ASLAQYFGNA QPLPQLYASL NTHSVSEAPS FPYSDAPMGA LGASMKTAPV  660
IESSKQHDSA LCNSLQLKKI EVTKTPQKST TEVKGEVQIP NLPLSSGPCG ISAEETLHGK  720
PTADGDAIKE KNGDGDNENK TGPATNEDSQ KIDTTENANG NDEVHDKKKS KDTKGIRAFK  780
FALVEFVKEL LKPTWKEGHI SKDVYKTIVK KVVDKVTGSL QDGHIPQTQE KIDHYLSFSK  840
SKLTKLVQVM HILKIQLVAT ITF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-08	C3H family protein