PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022949978.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 866aa MW: 95762.4 Da PI: 7.9498

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022949978.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	301	322	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++fa+ G C+ G +Ck++H XP_022949978.1 301 VICKYFAA-GSCRNGKNCKYSHH 322 589999.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence
MRKSLRVMSG SGRKHSSKWD LREDSHFEAD SVQDHSWPGK ESGPGWISAE IASDDGSKWS 60 GMATTNTVSK STQDWGLLSE EEPLPGTRAS LKEDRPNKGY NKNMDGTAEC DADKSYDTRM 120 SPDLDGRRSH GSNLSDRNDW IGSVRGRSRS RSWSRSPPHG NKRDSGFHDR NRNRTRVSTQ 180 LCRDFTSGRC RRGNGCQFLH QDDQNLDDSL ENRNRKGGRS FRSTSHDFKD HPRSGRSAAH 240 CTDFVKGRCH RGASCTFSHD SAFHELSRDS PNDISRDRKN DQSKEAYFSR GEREPCSSSL 300 VICKYFAAGS CRNGKNCKYS HHSQPRASPE RKSSTDKWEH AQCSDGREQS WDGLKSSELA 360 SGSDFTQLIE DKKEQTASEE PRYTWPSDQK CDHGLNNESK TRWDRAVDIK TVRSNKNDAI 420 PSKAENAGGC TGSSDPRGHR KWPSDDMEMS PDWHYPVQPS NHVVKGDCNV MQDSGSQTST 480 ALAISHAIVQ EALAKNQDIA IEPIVVDITR FQKNQTLTKD DTIASASNDN ITIDRTAASH 540 AEGNPSGNVG LGQRMAYHSD HPDGTVTNPK ISDGNFRVKL QKKDESMPGI NSGTTVTPNI 600 VTNDQIRQIT DLSASLAQYF GNAQPLPQLY ASLNTHSVSE APSFPYSDAP MGALGASMKT 660 APVIESSKQH DSALCNSLQL KKIEVTKTPQ KSTTEVKGEV QIPNLPLSSG PCGISAEETL 720 HGKPTADGDA IKEKNGDGDN ENKTGPATNE DSQKIDTTEN ANGNDEVHDK KKSKDTKGIR 780 AFKFALVEFV KELLKPTWKE GHISKDVYKT IVKKVVDKVT GSLQDGHIPQ TQEKIDHYLS 840 FSKSKLTKLV QVMHILKIQL VATITF

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence

MRKSLRVMSG SGRKHSSKWD LREDSHFEAD SVQDHSWPGK ESGPGWISAE IASDDGSKWS  60
GMATTNTVSK STQDWGLLSE EEPLPGTRAS LKEDRPNKGY NKNMDGTAEC DADKSYDTRM  120
SPDLDGRRSH GSNLSDRNDW IGSVRGRSRS RSWSRSPPHG NKRDSGFHDR NRNRTRVSTQ  180
LCRDFTSGRC RRGNGCQFLH QDDQNLDDSL ENRNRKGGRS FRSTSHDFKD HPRSGRSAAH  240
CTDFVKGRCH RGASCTFSHD SAFHELSRDS PNDISRDRKN DQSKEAYFSR GEREPCSSSL  300
VICKYFAAGS CRNGKNCKYS HHSQPRASPE RKSSTDKWEH AQCSDGREQS WDGLKSSELA  360
SGSDFTQLIE DKKEQTASEE PRYTWPSDQK CDHGLNNESK TRWDRAVDIK TVRSNKNDAI  420
PSKAENAGGC TGSSDPRGHR KWPSDDMEMS PDWHYPVQPS NHVVKGDCNV MQDSGSQTST  480
ALAISHAIVQ EALAKNQDIA IEPIVVDITR FQKNQTLTKD DTIASASNDN ITIDRTAASH  540
AEGNPSGNVG LGQRMAYHSD HPDGTVTNPK ISDGNFRVKL QKKDESMPGI NSGTTVTPNI  600
VTNDQIRQIT DLSASLAQYF GNAQPLPQLY ASLNTHSVSE APSFPYSDAP MGALGASMKT  660
APVIESSKQH DSALCNSLQL KKIEVTKTPQ KSTTEVKGEV QIPNLPLSSG PCGISAEETL  720
HGKPTADGDA IKEKNGDGDN ENKTGPATNE DSQKIDTTEN ANGNDEVHDK KKSKDTKGIR  780
AFKFALVEFV KELLKPTWKE GHISKDVYKT IVKKVVDKVT GSLQDGHIPQ TQEKIDHYLS  840
FSKSKLTKLV QVMHILKIQL VATITF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-08	C3H family protein