PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022949746.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 514aa MW: 57199.7 Da PI: 6.0849

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022949746.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.6e-17	150	199	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_022949746.1 150 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 199 78*****************......55**********************997 PP
2	AP2	43.8	6.5e-14	242	292	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g XP_022949746.1 242 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 292 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MWDLNDCPDV REGDESEACS SAKTSIEGDG DDDKRKRVGS ASNSSCSAAE EEEELEEEEE 60 EEEGSDEVLG SMVMQIDTQT PSPVTRQFFP LEDTEIPPPL PLPTTDSAFP RAHWVGVKFG 120 HPDPNNNSIN PNDLSHPIKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF 180 DTAHAAARAY DRAAIKFRGV EADINFSIED YEDDLKQMGN LTKEEFVHVL RRQSTGFPRG 240 SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEIEAA RAYDKAAIKC NGKEAVTNFD 300 PSIYENSTSN LADHSLDLSL GNSSSKQHDS PNGSLDPHHS SSAPLPMEAD WQRSQGFRPP 360 QLNLLQESSS GGGSGNKNYN NAQRGNTNRY LECETMQLLS QTHIQSPISF EMQRHGQFRR 420 QAGGVDQPHS QILLHNQNHP TFNYQIQFPG SSNGGRIIGS DLSLSLSDHQ NQVVESGPSQ 480 VHATAAASSG FSPQIRPSKN WLHKNGFHCL IRPS

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MWDLNDCPDV REGDESEACS SAKTSIEGDG DDDKRKRVGS ASNSSCSAAE EEEELEEEEE  60
EEEGSDEVLG SMVMQIDTQT PSPVTRQFFP LEDTEIPPPL PLPTTDSAFP RAHWVGVKFG  120
HPDPNNNSIN PNDLSHPIKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF  180
DTAHAAARAY DRAAIKFRGV EADINFSIED YEDDLKQMGN LTKEEFVHVL RRQSTGFPRG  240
SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEIEAA RAYDKAAIKC NGKEAVTNFD  300
PSIYENSTSN LADHSLDLSL GNSSSKQHDS PNGSLDPHHS SSAPLPMEAD WQRSQGFRPP  360
QLNLLQESSS GGGSGNKNYN NAQRGNTNRY LECETMQLLS QTHIQSPISF EMQRHGQFRR  420
QAGGVDQPHS QILLHNQNHP TFNYQIQFPG SSNGGRIIGS DLSLSLSDHQ NQVVESGPSQ  480
VHATAAASSG FSPQIRPSKN WLHKNGFHCL IRPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-110	AP2 family protein