PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022949570.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 651aa    MW: 72296.3 Da    PI: 5.894
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022949570.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.52.8e-1212626341374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL++c+ea+ s++  l+++l+ +l  +asp+g +p+ Rl+ay+teALa r+ r +++++++ pp+e ++++  ++ +al+l+++vsPi+kf 
  XP_022949570.1 262 LISLLMACVEAIGSKNIGLINHLIDKLGSRASPKGsSPISRLIAYYTEALAIRVCRVWPQVFHITPPREYDQMDDNTTGTALRLLNDVSPIPKFI 356
                     5799*******************************99********************************************************** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taN+++l+a+eg+++vHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++ v++rled+
  XP_022949570.1 357 HFTANEMLLRAFEGKDMVHIIDFDIKQGLQWPSLFQSLASRANPPSHVRITGIGE----SKQELNETGDRLAGFAEALRLPFEFHA-VVDRLEDV 446
                     *******************************************************....***************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +l++L+vk++E++ Vn++lqlh++l + ++     +++L l++s++P++vv++eqea+hn++++ +r++ +l+yy+ +fds++a+lp+es +r k
  XP_022949570.1 447 RLWMLHVKEQESVGVNCILQLHKTLYD-GNWGA-LRDFLGLIRSTNPTIVVMAEQEAEHNEPRLETRVAATLKYYAGIFDSIDASLPPESTARLK 539
                     *************************44.44444.689********************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplse..kaakqaklllrkvk..sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                     +E++ +grei+n++ ceg+er erh  ++kW++ +e+  G++ v +++  ++  q + ll++++   +g++v + ++++v l W+++p+++vS W
  XP_022949570.1 540 IEEM-FGREIRNMIGCEGRERYERHVGFKKWKKLMEQqGGLQCVGIRDddRELLQTQFLLKMYSsaAQGFNVTKLEEEAVcLRWEEQPVYTVSGW 633
                     ****.******************************98578****9986215788*********988899****98776666************** PP

            GRAS 374 r 374
                     +
  XP_022949570.1 634 T 634
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    
MLAGCSSSTL LSPRNRLRSE AQPQFQACHL QLPTSMSTQR LDLPCSFSRP KDTSAATARS  60
PSIRPVGLSV EKQNIRLPPL SSTNKQIKQE FWKEKGKNLK RIAEQIGIDD DENFISSAKR  120
KRESRDDGGD RLILSQFGSG GGSFWFHQPD GDEEELCFLP GSEVISLPSP FLSEIADLGE  180
SSSHVKAEDG SGSGSGSGSS SSSESERFSL RRRVTTENVP TATAAAATGV EIGNGSSRNP  240
SYHHHQGSGL NNEREEEEGF ELISLLMACV EAIGSKNIGL INHLIDKLGS RASPKGSSPI  300
SRLIAYYTEA LAIRVCRVWP QVFHITPPRE YDQMDDNTTG TALRLLNDVS PIPKFIHFTA  360
NEMLLRAFEG KDMVHIIDFD IKQGLQWPSL FQSLASRANP PSHVRITGIG ESKQELNETG  420
DRLAGFAEAL RLPFEFHAVV DRLEDVRLWM LHVKEQESVG VNCILQLHKT LYDGNWGALR  480
DFLGLIRSTN PTIVVMAEQE AEHNEPRLET RVAATLKYYA GIFDSIDASL PPESTARLKI  540
EEMFGREIRN MIGCEGRERY ERHVGFKKWK KLMEQQGGLQ CVGIRDDDRE LLQTQFLLKM  600
YSSAAQGFNV TKLEEEAVCL RWEEQPVYTV SGWTAAEVSG GSCSSSFNQQ T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein