PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022949461.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 506aa MW: 55520 Da PI: 8.8259

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022949461.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022949461.1 85 FVCEICSKGFQRDQNLQLHRRGH 107 89*******************88 PP
2	zf-C2H2	12.7	0.00037	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_022949461.1 162 WKCDKCSKRYAVQSDWKAHSKTC 184 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MIKSLLFQAQ AMEENLSNLT SASGEASSCS GNRSDQIPTN YSGGNYFSAP PPPPPKRKRN 60 LPGNPDPDAE VVALSPKTLM ATNRFVCEIC SKGFQRDQNL QLHRRGHNLP WKLKPRANKE 120 AIRKKVYVCP ETSCVHHDPS RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH 180 SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARS ITANPVLMTN NNPPLLPNPI 240 SSISHLNFQP QTHFNPLDIN SFALKKEHQN PQSSTNFIPP WLANHNQDLN PLIINPNHLG 300 QTSLNLPTAS SSPSPHMSAT ALLQKAAQMG ATMSSNNNAE APHTIIRPQH SQDHHVSDSS 360 ATTNNATCNF GLNLSSSSSS RDNQNQVLMG TEAGPGLSPA LPLYRNKTLV QTTFMNNNNN 420 TTFSPSAFEG ASFEIDEFGG MLKKDEIFND NPASEGLSTR DFLGLRAMSH TEFLSNIAAA 480 GYGNCINGGA GQTPQTQIRN QPSWQG

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MIKSLLFQAQ AMEENLSNLT SASGEASSCS GNRSDQIPTN YSGGNYFSAP PPPPPKRKRN  60
LPGNPDPDAE VVALSPKTLM ATNRFVCEIC SKGFQRDQNL QLHRRGHNLP WKLKPRANKE  120
AIRKKVYVCP ETSCVHHDPS RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH  180
SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARS ITANPVLMTN NNPPLLPNPI  240
SSISHLNFQP QTHFNPLDIN SFALKKEHQN PQSSTNFIPP WLANHNQDLN PLIINPNHLG  300
QTSLNLPTAS SSPSPHMSAT ALLQKAAQMG ATMSSNNNAE APHTIIRPQH SQDHHVSDSS  360
ATTNNATCNF GLNLSSSSSS RDNQNQVLMG TEAGPGLSPA LPLYRNKTLV QTTFMNNNNN  420
TTFSPSAFEG ASFEIDEFGG MLKKDEIFND NPASEGLSTR DFLGLRAMSH TEFLSNIAAA  480
GYGNCINGGA GQTPQTQIRN QPSWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	125	KLKPRANKEAIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-115	C2H2 family protein