PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022949269.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 1005aa MW: 110548 Da PI: 6.2377

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022949269.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.5	3e-41	154	231	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+a++yhrrhkvCe+hska+++lv++++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_022949269.1 154 VCQVEDCGADLSNARDYHRRHKVCEMHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKNNP 231 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1005 aa Download sequence
METGYGGEAC QLYGMGSMDL RAAVGKKSLE WDLNDWKWDG DLFIARPLNL VESDHLGSQV 60 FPIVSGIPLT GGSSNSSSSC SDEANTGIEK GKREVEKRRR DNVMEGENLN DEARSLSLKV 120 GGNGCQIVEK EAGNWEGSSG KKTKLTGGNS SRAVCQVEDC GADLSNARDY HRRHKVCEMH 180 SKASNALVAN VMQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKNN PDNVVNGNSP 240 PDEQTSSYLL LTLMRILANL HSNGSNKTTD QDLLSNLIRI LACQSGEHGS KNRSGILHEP 300 QNLLNGAKSD LVCTFLSNGP QVPLRSSKQP DTIPISETPI QATVRGGDTP AISSVKPSTS 360 NSPPAYSEIR DNTVGQCKMM NFDLNDVYVD SDDGMEDTER QARPVVHMGT SSLECPSWVQ 420 QDSHQSSPPQ TSGNSDSASA QSPSSSAGEA QSRTDRIILK LFGKAPNDFP HVLRAQVLNW 480 LSHSPTEIES YIRPGCVVLT IYLRQTEATW NDLCHDLGTS LNRLLDVSDE AFWRTGWVYV 540 RVQHQIAFVY HGQVVVDTSL PLRNKNYCRI TSVNPVAVSL SKKATFSVKG INLTRSTTRL 600 LCAIEGTYLT QEASDDSTES DDNSNARDDS QCVTFSCSIP VVCGRGFIEA EDDGLSSSSF 660 PFIVAEEDVC TEICTLQSAL EFTEICSNSG EATELEGRSH AMEFIHEIGW LFHRNHLKSR 720 LGNLDPNENV FSLSRFKWLV EFSMDHDWCA VVKKLLDVLL DGTVDFGDHP SLNFALTEMS 780 LLHRAVRKNS RSLVELLLGY SSKVMDSSSS DGSTGSFLFR PDVVGPAGLT PLHIAAGKDD 840 SMDVLDALTN DPGMVGVEAW KSARDVTGST PEDYARLRGH YSYIRLVQRK INKRSSAGHV 900 VLDIPSTVSD GSWNQKQNTD VMTSSRFEIG RTKLNHSQQD CSRCVMKPSC FGTSSKASLV 960 YRPAMLSMVA IAAVCVCVAL LFKSSPEVLY VFGPFRWELL EYGTS

Sequence ? help Back to Top

Protein Sequence Length: 1005 aa Download sequence

METGYGGEAC QLYGMGSMDL RAAVGKKSLE WDLNDWKWDG DLFIARPLNL VESDHLGSQV  60
FPIVSGIPLT GGSSNSSSSC SDEANTGIEK GKREVEKRRR DNVMEGENLN DEARSLSLKV  120
GGNGCQIVEK EAGNWEGSSG KKTKLTGGNS SRAVCQVEDC GADLSNARDY HRRHKVCEMH  180
SKASNALVAN VMQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNKRRRKNN PDNVVNGNSP  240
PDEQTSSYLL LTLMRILANL HSNGSNKTTD QDLLSNLIRI LACQSGEHGS KNRSGILHEP  300
QNLLNGAKSD LVCTFLSNGP QVPLRSSKQP DTIPISETPI QATVRGGDTP AISSVKPSTS  360
NSPPAYSEIR DNTVGQCKMM NFDLNDVYVD SDDGMEDTER QARPVVHMGT SSLECPSWVQ  420
QDSHQSSPPQ TSGNSDSASA QSPSSSAGEA QSRTDRIILK LFGKAPNDFP HVLRAQVLNW  480
LSHSPTEIES YIRPGCVVLT IYLRQTEATW NDLCHDLGTS LNRLLDVSDE AFWRTGWVYV  540
RVQHQIAFVY HGQVVVDTSL PLRNKNYCRI TSVNPVAVSL SKKATFSVKG INLTRSTTRL  600
LCAIEGTYLT QEASDDSTES DDNSNARDDS QCVTFSCSIP VVCGRGFIEA EDDGLSSSSF  660
PFIVAEEDVC TEICTLQSAL EFTEICSNSG EATELEGRSH AMEFIHEIGW LFHRNHLKSR  720
LGNLDPNENV FSLSRFKWLV EFSMDHDWCA VVKKLLDVLL DGTVDFGDHP SLNFALTEMS  780
LLHRAVRKNS RSLVELLLGY SSKVMDSSSS DGSTGSFLFR PDVVGPAGLT PLHIAAGKDD  840
SMDVLDALTN DPGMVGVEAW KSARDVTGST PEDYARLRGH YSYIRLVQRK INKRSSAGHV  900
VLDIPSTVSD GSWNQKQNTD VMTSSRFEIG RTKLNHSQQD CSRCVMKPSC FGTSSKASLV  960
YRPAMLSMVA IAAVCVCVAL LFKSSPEVLY VFGPFRWELL EYGTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein