PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022949052.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 324aa MW: 34885 Da PI: 4.6935

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022949052.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.7	1.4e-09	22	66	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++ + C+ + lC+ C e+H+ H +vp+ XP_022949052.1 22 VICEACERSPAVFICKADAASLCAACDAEIHSAnplarrHHRVPI 66 69*****************************66899999877775 PP
2	CCT	70.7	3.7e-24	255	298	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_022949052.1 255 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 298 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MLKTEDDYFG GAAATATATT AVICEACERS PAVFICKADA ASLCAACDAE IHSANPLARR 60 HHRVPIGGAD MVGTTPECQE DEDEDEAASW LLLNPLKTNN ENRGGGSIQS NNNTNGLFLL 120 GGEDDYLNFV EFNGCGEDQF EGSENYGGGG GGGGEDRVVP IEFEGKDPML EQSYGGVDGS 180 YSYNGFLTHA VTSLPTSLLP SSMEVGVVPD SATTMSDISV FSNIRPPKGT IDLFSGAADV 240 AAVQMPATQL CPMDREARVL RYREKKKTRK FEKTIRYASR KAYAETRPRI KGRFAKRTDV 300 EVKLDRKFSS PLMANVGYGI VPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-52	CO-like family protein