PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022948962.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 393aa MW: 43247.6 Da PI: 9.0758

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022948962.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.5e-06	49	71	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_022948962.1 49 YVCEICNQGFQRDQNLQMHRRRH 71 9*********************9 PP
2	zf-C2H2	15.8	3.9e-05	126	148	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_022948962.1 126 WVCQKCSKGYAVQSDYKAHLKTC 148 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MIASATTSSD PFSSLENGTK RKRRPAGTPD PDAEVVSLSP KTLLESDRYV CEICNQGFQR 60 DQNLQMHRRR HKVPWKLLKR ESPVVRKRVF VCPEPTCLHH DPCHALGDLV GIKKHFRRKH 120 SNHKQWVCQK CSKGYAVQSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH QDACNMGHLQ 180 QQSQTLQPAA CLSQTASSPS PSSDTNISSA PNWAALIAPP ISKPPDANNN GSPHDHNLDL 240 KLSTGSNSNS NSNPNPNPNL VEGNKGCSSI KLQLSIGSCE FVDGARDVRD EVGQTLRVAM 300 AEKAYAEEAR QQAKRQVEIA EQEFANAKRM RQQAQAELDK AIALKQTAIK RVNSTILEIT 360 CQACQKQFQA KTTTTTTTTA ASTTTTTTAS CRS

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MIASATTSSD PFSSLENGTK RKRRPAGTPD PDAEVVSLSP KTLLESDRYV CEICNQGFQR  60
DQNLQMHRRR HKVPWKLLKR ESPVVRKRVF VCPEPTCLHH DPCHALGDLV GIKKHFRRKH  120
SNHKQWVCQK CSKGYAVQSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH QDACNMGHLQ  180
QQSQTLQPAA CLSQTASSPS PSSDTNISSA PNWAALIAPP ISKPPDANNN GSPHDHNLDL  240
KLSTGSNSNS NSNPNPNPNL VEGNKGCSSI KLQLSIGSCE FVDGARDVRD EVGQTLRVAM  300
AEKAYAEEAR QQAKRQVEIA EQEFANAKRM RQQAQAELDK AIALKQTAIK RVNSTILEIT  360
CQACQKQFQA KTTTTTTTTA ASTTTTTTAS CRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	25	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-129	C2H2 family protein