PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022948574.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 725aa MW: 79345.2 Da PI: 7.0492

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022948574.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	302	322	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_022948574.1 302 PCPDFRK-GACRRGDMCEYAHG 322 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MCGGPEKSNS ASTTTSASSP NPKDMSHLTV DCEDSFYSLL ELASDNDAEG FKRLMGSDLL 60 SLNKSGLWYV RQKGSKQVVH EHRTPLMVAA TYGCVDVLKL ILSYPEVDVN LSSGTDKSTA 120 LHCATSSGSV NAVDIVDLLL SAGADPNAKD INGDRPVDVI FVHPKLQKQN TMFRLEELLN 180 NHSNGSMDVS CLRLSIKMPD SGSPPLSSSL EDEFPSPPKS MSSPKFTDGF ATTKEKKEYP 240 IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTNEELRP 360 LYVSTGSAVP SPRSIGSAPT VMDMATALGL LPGSPSSVSA LSPSPFAQSM SPSSNGVSHS 420 SVNWQQPNVP TLHLPGSNLQ SSRLRSSLNA RDMPLEDFNV LPNFDNQPRI LNDINCFSQP 480 RPSAISVSRS GWTQTLTPNN LEELFSNEIP LSPRFSDPAT NVFSPTRKST LLNQFQQQQQ 540 NMLSPINTSI MSPKTADQPL LQASFGVSSP GRMSPRSTEP LSPMGSRFSA FVQREKQHLR 600 SLSSRELGSN VPSSLIGSPV NSLPKWGSPN GKVDWSVGKN ELGQLRRSSS FEIGNNGEEP 660 DLSWVQSLVK ESPPEMLREK SAAPRMGGAA ASGEGLTSTK SQLESTDHSV IGAWLEQMQL 720 DQLVV

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MCGGPEKSNS ASTTTSASSP NPKDMSHLTV DCEDSFYSLL ELASDNDAEG FKRLMGSDLL  60
SLNKSGLWYV RQKGSKQVVH EHRTPLMVAA TYGCVDVLKL ILSYPEVDVN LSSGTDKSTA  120
LHCATSSGSV NAVDIVDLLL SAGADPNAKD INGDRPVDVI FVHPKLQKQN TMFRLEELLN  180
NHSNGSMDVS CLRLSIKMPD SGSPPLSSSL EDEFPSPPKS MSSPKFTDGF ATTKEKKEYP  240
IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTNEELRP  360
LYVSTGSAVP SPRSIGSAPT VMDMATALGL LPGSPSSVSA LSPSPFAQSM SPSSNGVSHS  420
SVNWQQPNVP TLHLPGSNLQ SSRLRSSLNA RDMPLEDFNV LPNFDNQPRI LNDINCFSQP  480
RPSAISVSRS GWTQTLTPNN LEELFSNEIP LSPRFSDPAT NVFSPTRKST LLNQFQQQQQ  540
NMLSPINTSI MSPKTADQPL LQASFGVSSP GRMSPRSTEP LSPMGSRFSA FVQREKQHLR  600
SLSSRELGSN VPSSLIGSPV NSLPKWGSPN GKVDWSVGKN ELGQLRRSSS FEIGNNGEEP  660
DLSWVQSLVK ESPPEMLREK SAAPRMGGAA ASGEGLTSTK SQLESTDHSV IGAWLEQMQL  720
DQLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein