PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022948462.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 516aa MW: 57844.6 Da PI: 6.2368

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022948462.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.2	2.7e-15	194	253	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_022948462.1 194 SQFRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 253 789****************655454478446***********************98 PP
2	AP2	46.6	8.2e-15	298	347	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_022948462.1 298 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 347 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MSNWLGFSLT PHLKIHDATS ADDQHPNPSS FPPLMPLRSD GSLCIAAAHD WRSYENEMGA 60 RNEEESPKLE DFLGNCYSNS PPNDQTHNNN TNFIQANTNN NYHYQTDHHS LISNNGNAIY 120 KSWLGPTTSS PQNECGFRSL SLGMSPNSHN DIVSLPSPPH VAVDSRKRPM PVGKPPVKEP 180 VPRKSIDTFG QRTSQFRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQVY LGGYDKEEKA 240 ARAYDLAALK YWGPTTHINF SLSTYENELE EMKNMTRQEF VANLRRKSSG FSRGASMYRG 300 VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGTSA VTNFDISRYD 360 VKRICSSSTL IASDLAKRSP LKDGIPSTAE EYSACASPTS SQPLLAITEN GDVDESQQEL 420 VDMVWCDNGG KDDNNQQEEN VAKNLMGSRN ETEASKCCMV QNNGEFGVGV GGGEYSQGYY 480 SMEEAKYEDG RDENREVEND VTLAHHQVPM FALWNE

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MSNWLGFSLT PHLKIHDATS ADDQHPNPSS FPPLMPLRSD GSLCIAAAHD WRSYENEMGA  60
RNEEESPKLE DFLGNCYSNS PPNDQTHNNN TNFIQANTNN NYHYQTDHHS LISNNGNAIY  120
KSWLGPTTSS PQNECGFRSL SLGMSPNSHN DIVSLPSPPH VAVDSRKRPM PVGKPPVKEP  180
VPRKSIDTFG QRTSQFRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQVY LGGYDKEEKA  240
ARAYDLAALK YWGPTTHINF SLSTYENELE EMKNMTRQEF VANLRRKSSG FSRGASMYRG  300
VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGTSA VTNFDISRYD  360
VKRICSSSTL IASDLAKRSP LKDGIPSTAE EYSACASPTS SQPLLAITEN GDVDESQQEL  420
VDMVWCDNGG KDDNNQQEEN VAKNLMGSRN ETEASKCCMV QNNGEFGVGV GGGEYSQGYY  480
SMEEAKYEDG RDENREVEND VTLAHHQVPM FALWNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-126	AP2 family protein