PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022948216.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 477aa MW: 51876.3 Da PI: 7.2246

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022948216.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.7	5.3e-17	156	205	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_022948216.1 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 205 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MFDLNLNVDS VDATQKEDSV VFFEKLPQGS GNHVDESGTS NSSIVNADTS SNGGDDDSCS 60 TRAGGELFTL NFEILKAGST NDMVTKEFFP LGGAVSAEFG IPQGHKSASS SSSSSRKNWI 120 DLACNRSSSA GEGRTVQPVQ PQPVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH SAARAYDRAA IKFRGVDADI NFNVSDYEED LKLMENLSKE EFVHILRRQS 240 TGFSRGSSKY RGVTLHKCGR WEARMGQLLG KKAYDKAAIK CNGREAVTNF EPSTYEGEGV 300 SEGSSEGGRS MLDLNLGISP PSNCQKDDNG HLRFQSGPCF PNDRSTMMES NARAAVGDPP 360 VNGLVMTSEH APLWNGTQSS FFPSEESMTE KRLALGSSQG VPNWAWQIHG PINAAQMPLF 420 STAASSGFSF SATHFPAAMP PPHQPSSIAQ NIHFNSPKAS LNSAQYHHLL NQQHAPP

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MFDLNLNVDS VDATQKEDSV VFFEKLPQGS GNHVDESGTS NSSIVNADTS SNGGDDDSCS  60
TRAGGELFTL NFEILKAGST NDMVTKEFFP LGGAVSAEFG IPQGHKSASS SSSSSRKNWI  120
DLACNRSSSA GEGRTVQPVQ PQPVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAH SAARAYDRAA IKFRGVDADI NFNVSDYEED LKLMENLSKE EFVHILRRQS  240
TGFSRGSSKY RGVTLHKCGR WEARMGQLLG KKAYDKAAIK CNGREAVTNF EPSTYEGEGV  300
SEGSSEGGRS MLDLNLGISP PSNCQKDDNG HLRFQSGPCF PNDRSTMMES NARAAVGDPP  360
VNGLVMTSEH APLWNGTQSS FFPSEESMTE KRLALGSSQG VPNWAWQIHG PINAAQMPLF  420
STAASSGFSF SATHFPAAMP PPHQPSSIAQ NIHFNSPKAS LNSAQYHHLL NQQHAPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	1e-115	AP2 family protein