PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022947972.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 416aa MW: 45406.8 Da PI: 5.0947

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022947972.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.6	4.4e-07	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+ ++++++ fC+++ +lC +C + H+ Ht++ XP_022947972.1 4 MCDFCGDQRAMVFCRSDVACLCLSCDRNVHSAnalsrrHTRT 45 7*****************************657888889876 PP
2	zf-B_box	20.3	1.2e-06	47	88	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 C++++ ++++ C d ++ lC++C ++H g H+++ XP_022947972.1 47 LCERCHLQPASVRCIDERVSLCQNCDWTGH-GtsttsssHKRQ 88 7*****************************.547777888765 PP
3	CCT	58.5	2.4e-20	359	401	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R++a+lRYkeK+ktRkFeK++rY++RKa+A+ R RvKGrFvk XP_022947972.1 359 RNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKV 401 99***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MGVMCDFCGD QRAMVFCRSD VACLCLSCDR NVHSANALSR RHTRTLLCER CHLQPASVRC 60 IDERVSLCQN CDWTGHGTST TSSSHKRQAI NCYSGCPSAA ELSSIWSFVL EVPSVNDACE 120 TEMGLMSISE TNLTGAWCPS ENNDACRRML GSTEARDVCS RDKSNVLVGS SSLSDFGSRP 180 HTSDQPVELA NMAVPKFCCP GTKLPGFCGD DDDDIYKEFD MDEMDLNLEN YEELFGMSLN 240 HSEDLFENGG IDSLFEAKGF EDSVCHSAVA AEGSPVGVVK PMQPACSNGA SADSVMSTKT 300 EPILCFNSRQ ASGVSFSGVT GESSAGDYQD CGASSMLLMG EPPPWCAPGT ESSIPSSDRN 360 NAVLRYKEKK KTRKFEKRVR YATRKARADV RRRVKGRFVK VGEAYDYDPL SQTRSC

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MGVMCDFCGD QRAMVFCRSD VACLCLSCDR NVHSANALSR RHTRTLLCER CHLQPASVRC  60
IDERVSLCQN CDWTGHGTST TSSSHKRQAI NCYSGCPSAA ELSSIWSFVL EVPSVNDACE  120
TEMGLMSISE TNLTGAWCPS ENNDACRRML GSTEARDVCS RDKSNVLVGS SSLSDFGSRP  180
HTSDQPVELA NMAVPKFCCP GTKLPGFCGD DDDDIYKEFD MDEMDLNLEN YEELFGMSLN  240
HSEDLFENGG IDSLFEAKGF EDSVCHSAVA AEGSPVGVVK PMQPACSNGA SADSVMSTKT  300
EPILCFNSRQ ASGVSFSGVT GESSAGDYQD CGASSMLLMG EPPPWCAPGT ESSIPSSDRN  360
NAVLRYKEKK KTRKFEKRVR YATRKARADV RRRVKGRFVK VGEAYDYDPL SQTRSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-111	CO-like family protein