PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022947968.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 462aa MW: 50719.9 Da PI: 5.51

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022947968.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.7	4.1e-07	50	91	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C+ ++++++ fC+++ +lC +C + H+ Ht++ XP_022947968.1 50 MCDFCGDQRAMVFCRSDVACLCLSCDRNVHSAnalsrrHTRT 91 7*****************************657888888876 PP
2	zf-B_box	20.1	1.3e-06	93	134	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 C++++ ++++ C d ++ lC++C ++H g H+++ XP_022947968.1 93 LCERCHLQPASVRCIDERVSLCQNCDWTGH-GtsttsssHKRQ 134 7*****************************.547777888765 PP
3	CCT	58.3	2.8e-20	405	447	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R++a+lRYkeK+ktRkFeK++rY++RKa+A+ R RvKGrFvk XP_022947968.1 405 RNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKV 447 99***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MLPKWKFLLC FLFSFQGRNS THLAVLGFDK SSDNLSSERF ENSFGKMGVM CDFCGDQRAM 60 VFCRSDVACL CLSCDRNVHS ANALSRRHTR TLLCERCHLQ PASVRCIDER VSLCQNCDWT 120 GHGTSTTSSS HKRQAINCYS GCPSAAELSS IWSFVLEVPS VNDACETEMG LMSISETNLT 180 GAWCPSENND ACRRMLGSTE ARDVCSRDKS NVLVGSSSLS DFGSRPHTSD QPVELANMAV 240 PKFCCPGTKL PGFCGDDDDD IYKEFDMDEM DLNLENYEEL FGMSLNHSED LFENGGIDSL 300 FEAKGFEDSV CHSAVAAEGS PVGVVKPMQP ACSNGASADS VMSTKTEPIL CFNSRQASGV 360 SFSGVTGESS AGDYQDCGAS SMLLMGEPPP WCAPGTESSI PSSDRNNAVL RYKEKKKTRK 420 FEKRVRYATR KARADVRRRV KGRFVKVGEA YDYDPLSQTR SC

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MLPKWKFLLC FLFSFQGRNS THLAVLGFDK SSDNLSSERF ENSFGKMGVM CDFCGDQRAM  60
VFCRSDVACL CLSCDRNVHS ANALSRRHTR TLLCERCHLQ PASVRCIDER VSLCQNCDWT  120
GHGTSTTSSS HKRQAINCYS GCPSAAELSS IWSFVLEVPS VNDACETEMG LMSISETNLT  180
GAWCPSENND ACRRMLGSTE ARDVCSRDKS NVLVGSSSLS DFGSRPHTSD QPVELANMAV  240
PKFCCPGTKL PGFCGDDDDD IYKEFDMDEM DLNLENYEEL FGMSLNHSED LFENGGIDSL  300
FEAKGFEDSV CHSAVAAEGS PVGVVKPMQP ACSNGASADS VMSTKTEPIL CFNSRQASGV  360
SFSGVTGESS AGDYQDCGAS SMLLMGEPPP WCAPGTESSI PSSDRNNAVL RYKEKKKTRK  420
FEKRVRYATR KARADVRRRV KGRFVKVGEA YDYDPLSQTR SC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-111	CO-like family protein