PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022947687.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 535aa    MW: 59918.9 Da    PI: 6.4082
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022947687.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.49.8e-1371665352374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L++cA+avs++d+ +aq+l+ +l++++s +g+pmqRl ay++e+L ar a s+s++yk+l+++e +   s e l++++++++v+P++kf+++
  XP_022947687.1 166 KKILIACAKAVSDNDALMAQWLMDELRKMVSVRGEPMQRLGAYMLEGLVARSAFSGSSIYKSLRCKEPA---SMELLSYMHVLYDVCPYFKFGYM 257
                     789*****************************************************************9...99********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea++ e+rvHiiDf+isqG+QW++L+qa+a Rp+gpp++RiTg+++p+s   ++  l  +g rL+k+A+ ++vpfef+  +a +  d+
  XP_022947687.1 258 SANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAhaRRGGLDIVGMRLSKLAKLFNVPFEFHS-AAISGCDV 351
                     ******************************************************999889999***********************.88899*** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + ++L +++gEalaVn++++lh+++desvs+e++rd++L+lvk+lsPkvv++veqe+++n++ F+ rf+e+l+yy a+f+s++++lpr+++eri+
  XP_022947687.1 352 QQKDLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLPRQHKERIN 446
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+++l+re+vn++acegaer+erhe l+kWr r+++aGF+p+pls+ +++++k+ll +++++ yr+ee++g+l+lgW+dr Lv+ +aW+
  XP_022947687.1 447 IEQHCLAREVVNILACEGAERVERHELLGKWRLRFSMAGFTPYPLSSLVNATIKTLLDNYSNR-YRLEEKEGALYLGWMDRDLVASCAWK 535
                     *************************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    
MQASQLHRGQ HMSKRLCYQP LQGVDAYCVS QFQTLGRQLY TNAGNERAQF NLQDISDRYC  60
TLESSSGSHG YATRSSTSTV TFSSNGSPAD QHNSPDNTYG SPVSGSCITD DISDFRHKLL  120
ELETVMLGPD SDIIDSFDSF YQEGTENSEV GSWGQVMDAI TKGNLKKILI ACAKAVSDND  180
ALMAQWLMDE LRKMVSVRGE PMQRLGAYML EGLVARSAFS GSSIYKSLRC KEPASMELLS  240
YMHVLYDVCP YFKFGYMSAN GAIAEAMKDE DRVHIIDFQI SQGTQWITLI QAFAGRPGGP  300
PHIRITGIDD PASAHARRGG LDIVGMRLSK LAKLFNVPFE FHSAAISGCD VQQKDLGIRR  360
GEALAVNFAF MLHHMPDESV STENHRDRLL RLVKGLSPKV VTLVEQESNT NTAAFFPRFI  420
ETLDYYNAMF ESIDVTLPRQ HKERINIEQH CLAREVVNIL ACEGAERVER HELLGKWRLR  480
FSMAGFTPYP LSSLVNATIK TLLDNYSNRY RLEEKEGALY LGWMDRDLVA SCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein