PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022947375.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 421aa MW: 46731.4 Da PI: 6.2602

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022947375.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.7	2.5e-17	143	192	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_022947375.1 143 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 192 78*****************......55**********************998 PP
2	AP2	41	4.8e-13	235	285	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_022947375.1 235 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEIEAARAYDKAAIKCNG 285 79******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MWDLNDSPDH GGTDEFEGLS SIDGDDDRAK WVGSINSNSS SSAVVLEDGS DADEAGVDER 60 EHPVSRESFS ATHPPATRQF FPLENSNVDA SSASGGGGGS TAFPRARWFG VKFCQTEPVS 120 AVRPMAVLQP IKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHSAA 180 RAYDRAAIKF RGTDADINFS IEDYEEDLKQ MGKLTKEEFV HVLRRQSTGY PRGSSKFRGV 240 TLHKCGRWEA RMGQFLGKKY VYLGLFDSEI EAARAYDKAA IKCNGKEAVT NFDPTIYENE 300 LRTDASSGYA LEQNLDLRLG NSSSKQHTND MQNKESNVIE KMQFGSETIV RCPRSIDTTI 360 HEQSPYINES NSEIDVSLSL SERQQWQQGC GGYEQIGTAA AASSGFPQIQ VSSSPNWVKK 420 K

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MWDLNDSPDH GGTDEFEGLS SIDGDDDRAK WVGSINSNSS SSAVVLEDGS DADEAGVDER  60
EHPVSRESFS ATHPPATRQF FPLENSNVDA SSASGGGGGS TAFPRARWFG VKFCQTEPVS  120
AVRPMAVLQP IKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHSAA  180
RAYDRAAIKF RGTDADINFS IEDYEEDLKQ MGKLTKEEFV HVLRRQSTGY PRGSSKFRGV  240
TLHKCGRWEA RMGQFLGKKY VYLGLFDSEI EAARAYDKAA IKCNGKEAVT NFDPTIYENE  300
LRTDASSGYA LEQNLDLRLG NSSSKQHTND MQNKESNVIE KMQFGSETIV RCPRSIDTTI  360
HEQSPYINES NSEIDVSLSL SERQQWQQGC GGYEQIGTAA AASSGFPQIQ VSSSPNWVKK  420
K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-120	AP2 family protein