PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022947082.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 427aa MW: 46988.3 Da PI: 9.2871

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022947082.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.9e-06	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H XP_022947082.1 63 FVCEICGKGFQRDQNLQLHRRGH 85 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MQQSLRMMEK MVNDEFPNSF LQIPLARSNP FSAKKKRNHP GTPDPDAEVI ALSPKTLMAM 60 NRFVCEICGK GFQRDQNLQL HRRGHNLPWK LKQRSNKEVR KRVYVCPETS CVHHHPSRAL 120 GDLTGIKKHF CRKHGEKKWK CEKCSKRYAV QSDCKAHSKT CGTKEYKCGC GTLFSRRDSF 180 ITHRAFCDAL AEETARVNAA TTITAAMTAA GNFNCNFMAG ITEPPFMPSI FSCNGLSSRT 240 NNNNNSNLHP LPQINSGLMY CDPLLNSCHA PPPADYNLNW VFGTKGNNSV QNPPLMSGSG 300 GGGVSSLYSH QLQQVNQTHM ANMSATALLQ KAAEIGANSS SDPPFFQEGF VLKCSGGTVQ 360 NGNEFSNSVT QIPIMANENE MYTAKRRRTQ SEFMGSGSGF TGGGQTRDFL GVGANTICHT 420 SSINGWI

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MQQSLRMMEK MVNDEFPNSF LQIPLARSNP FSAKKKRNHP GTPDPDAEVI ALSPKTLMAM  60
NRFVCEICGK GFQRDQNLQL HRRGHNLPWK LKQRSNKEVR KRVYVCPETS CVHHHPSRAL  120
GDLTGIKKHF CRKHGEKKWK CEKCSKRYAV QSDCKAHSKT CGTKEYKCGC GTLFSRRDSF  180
ITHRAFCDAL AEETARVNAA TTITAAMTAA GNFNCNFMAG ITEPPFMPSI FSCNGLSSRT  240
NNNNNSNLHP LPQINSGLMY CDPLLNSCHA PPPADYNLNW VFGTKGNNSV QNPPLMSGSG  300
GGGVSSLYSH QLQQVNQTHM ANMSATALLQ KAAEIGANSS SDPPFFQEGF VLKCSGGTVQ  360
NGNEFSNSVT QIPIMANENE MYTAKRRRTQ SEFMGSGSGF TGGGQTRDFL GVGANTICHT  420
SSINGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-130	C2H2 family protein