PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022946897.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family AP2
Protein Properties Length: 330aa    MW: 37505.1 Da    PI: 10.0604
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022946897.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79.3e-1651110155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_022946897.1  51 SRFRGVSRHRWTGRFEAHLWDkGSWNPtqrKKgKQVYLGAYDEEESAARAYDLAALKYWG 110
                     789******************988855556447*************************98 PP
2AP257.33.8e-18153204155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa+a++ a+ +++g
  XP_022946897.1 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 204
                     89****99**********99966...3.6*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MDFTVLNSEF CSFKTDSGAV KCIRRRRRSC KGSRQPPKSA ADQSTTTKRS SRFRGVSRHR  60
WTGRFEAHLW DKGSWNPTQR KKGKQVYLGA YDEEESAARA YDLAALKYWG TSTFTNFSAS  120
DYENEIKIMK NVTKEEYLAS LRRRSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL  180
YLGTYGTQEE AARAYDIAAI EYRGLNAVTN FELSSYIRWL KPNPMQPSPP LSFSIDTNTT  240
SNNAFIPTAP QTSPRTALGL LLKSSLFKHL MEKNVVNVNG NAEMEEEYSM DEGRALLSFV  300
EPNPYLHLQY SCQGTTNLSL STPFHYSALA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17785PTQRKKGKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-81AP2 family protein