PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022946731.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

GRF

Protein Properties

Length: 399aa MW: 45251.5 Da PI: 8.6767

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022946731.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.7	1.1e-24	103	146	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e XP_022946731.1 103 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 146 79***************************************987 PP
2	QLQ	56.1	1.1e-19	8	38	2	32
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 +FTaaQ+q+L++Q+l++Ky++++ PvPp+Ll XP_022946731.1 8 PFTAAQWQELEHQALIFKYMVSGIPVPPDLL 38 8****************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MSARNRLPFT AAQWQELEHQ ALIFKYMVSG IPVPPDLLYT MKRSSLDTPF ISRLFPHQYP 60 DGNTSYSSVL TRIIHYDAQV LGLYCVCAVG WNFVQMGSGR KIDPEPGRCR RTDGKKWRCS 120 KEAYPDSKYC ERHMHRGKNR SRKPVEVLKP TATITALTSN PSTPPISSIT HNSTASLSTN 180 SFPSEIHTHS CFNTPPPPHP FLYQHGSFSR PPGSAHFQHN SNPSLLLDPP ADYRRNRYVY 240 GAKEDVDKHP FVSEEHSGNM RGFSASSMED PWQLTPLTMS CSSSSPRHKN CSALQGDYSS 300 YLQLQSFGGS PKQVKQDEHY YAVGKYNEMQ SKMDREKPEK TMHHFFGEWS PKDRESWVDL 360 DDKSSNTGSV SETRLSMSIL NSSQHDFSSI FGSNKHNEN

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MSARNRLPFT AAQWQELEHQ ALIFKYMVSG IPVPPDLLYT MKRSSLDTPF ISRLFPHQYP  60
DGNTSYSSVL TRIIHYDAQV LGLYCVCAVG WNFVQMGSGR KIDPEPGRCR RTDGKKWRCS  120
KEAYPDSKYC ERHMHRGKNR SRKPVEVLKP TATITALTSN PSTPPISSIT HNSTASLSTN  180
SFPSEIHTHS CFNTPPPPHP FLYQHGSFSR PPGSAHFQHN SNPSLLLDPP ADYRRNRYVY  240
GAKEDVDKHP FVSEEHSGNM RGFSASSMED PWQLTPLTMS CSSSSPRHKN CSALQGDYSS  300
YLQLQSFGGS PKQVKQDEHY YAVGKYNEMQ SKMDREKPEK TMHHFFGEWS PKDRESWVDL  360
DDKSSNTGSV SETRLSMSIL NSSQHDFSSI FGSNKHNEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-51	GRF family protein