PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022945519.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 406aa MW: 45657.2 Da PI: 5.5775

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022945519.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.5	1.4e-12	82	140	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ ++++lg+ e Aa+ ++ a++k++g XP_022945519.1 82 SIYRGVTRHRWTGRFEAHLWDkSSWNSiqnKKgRQVYLGRDXE-EAAARTYDLAALKYWG 140 57*****************777788866447**8888.************98 PP
2	AP2	52.9	9.1e-17	183	234	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g XP_022945519.1 183 SKYRGVARHHYNGRWEARIGRvF---G-SKYLYLGTYNTQEEAAAAYDMAAIEYRG 234 89**************99966...3.5***********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MSISPSASSC SSSSSSCVGS DSAINIKKKK KNLSAPLRPH SEKARIKRRR RNQDESKREI 60 HNNNSTGINN NNNNASSARR SSIYRGVTRH RWTGRFEAHL WDKSSWNSIQ NKKGRQVYLG 120 RDXEEAAART YDLAALKYWG PETTLNFPAE SYTNEMEEMR KVTKEEYLAS LRRRSSGFSR 180 GVSKYRGVAR HHYNGRWEAR IGRVFGSKYL YLGTYNTQEE AAAAYDMAAI EYRGPNAVTN 240 FDISNYIGRR LETKSSVFEA AELPKEEPND SPVSSEGEVV YQPEEQQTTS WPSLQFSTML 300 PLIENSPSMG VMGDDQDLNW SFLDTGFVEV PDLPLEKTSE LADLYFDEIG FEDDIGLMFE 360 TSIEGGDSKE DLNVGKMEMN NAPSPSSSSI ITNSVSCEKD EIVGFC

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MSISPSASSC SSSSSSCVGS DSAINIKKKK KNLSAPLRPH SEKARIKRRR RNQDESKREI  60
HNNNSTGINN NNNNASSARR SSIYRGVTRH RWTGRFEAHL WDKSSWNSIQ NKKGRQVYLG  120
RDXEEAAART YDLAALKYWG PETTLNFPAE SYTNEMEEMR KVTKEEYLAS LRRRSSGFSR  180
GVSKYRGVAR HHYNGRWEAR IGRVFGSKYL YLGTYNTQEE AAAAYDMAAI EYRGPNAVTN  240
FDISNYIGRR LETKSSVFEA AELPKEEPND SPVSSEGEVV YQPEEQQTTS WPSLQFSTML  300
PLIENSPSMG VMGDDQDLNW SFLDTGFVEV PDLPLEKTSE LADLYFDEIG FEDDIGLMFE  360
TSIEGGDSKE DLNVGKMEMN NAPSPSSSSI ITNSVSCEKD EIVGFC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	50	KKKKKNLSAPLRPHSEKARIKRRR
2	28	51	KKKKKNLSAPLRPHSEKARIKRRR
3	29	52	KKKKKNLSAPLRPHSEKARIKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-91	AP2 family protein