PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022945425.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HD-ZIP

Protein Properties

Length: 783aa MW: 86939 Da PI: 5.9737

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022945425.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.4	1.9e-21	87	142	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++eLe +F+++++p+ ++r eL+++lgL+ +qVk+WFqNrR+++k XP_022945425.1 87 RKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLESKQVKFWFQNRRTQMK 142 7999*************************************************999 PP
2	START	172.6	2.6e-54	297	517	2	205
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++a++elvk+a+ + p+Wv+s+ e +n de+ ++f++s + ++ea r++++v+ +++ l e+l+d + +W e+++ +a+t+ XP_022945425.1 297 LALAAMDELVKMAQIDTPLWVRSRdssgkETLNFDEYSRTFPSSAAmqhtnWTTEATRDTTMVIINSMALIETLMDAN-RWAEMFPcliaRATTI 390 6899*********************9999******99888999999**********************.************ PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +vis+g g lqlm ael +lsplvp R f+R+++q+ +g w++vdvS+ + ++ + +++lpSg+++++++ng skvtwveh+ XP_022945425.1 391 DVISNGmggtrnGSLQLMHAELRVLSPLVPvRTLKFLRFCKQHADGLWAVVDVSLGEGADAD---MFFSCRRLPSGCIVQDMPNGFSKVTWVEHT 482 ********************************************************87...5************************* PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqce 205 ++++ ++h+l+r++++ g+ +g ++w+atlqrqc XP_022945425.1 483 EYDETVVHQLYRQIISWGIGFGSQRWLATLQRQCD 517 *******************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence
MPNGAVADPS FLAFPIPCSL PNSSEFSNSI GKMDGYREAC LLGDSFDPNG VVRMREDEYD 60 SRSGSDNIDG AVSGDDQDAN DERRRKRKKY HRHTPHQIQE LEIFFKECPH PDDKQRSELS 120 RRLGLESKQV KFWFQNRRTQ MKTQIERHEN AILKHENDKL RAENSVMKDA ISNPTCNTCG 180 GPSIPVHLSF EEHQLRIDNA RLRDELHRLY TVTNKFLGWP VLPFVNHSSS VSSDSCLELS 240 VGRNGMGNVS NISDPIPMGL NLGNGLFNGG PVMPISKSQM GMPGNDIPID RTIYVDLALA 300 AMDELVKMAQ IDTPLWVRSR DSSGKETLNF DEYSRTFPSS AAMQHTNWTT EATRDTTMVI 360 INSMALIETL MDANRWAEMF PCLIARATTI DVISNGMGGT RNGSLQLMHA ELRVLSPLVP 420 VRTLKFLRFC KQHADGLWAV VDVSLGEGAD ADMFFSCRRL PSGCIVQDMP NGFSKVTWVE 480 HTEYDETVVH QLYRQIISWG IGFGSQRWLA TLQRQCDCLA ILMSSTEDPA GISPHGRRSM 540 LKLSQRMVDN FCSGICTSTL HKWDKLVVGN ISEDVKMMAR NSINDPGEPP GIVLSAATSV 600 WMPVTQQRLF AFLQDECLRS EWDILSNGRP MIEMLRISKG QGLDNRVSLL RANPMNANEN 660 TMLILQESWT DISGSLIVYA PVDAASINLV MRGGDSAYVS LLPSGFAILP DGPSIYASTN 720 NDKDGSIMSD INSGYAGGCL LTVAFQILVN NLPTAKLTVE SVETVNNLIS CTIQKIKVAL 780 RVS

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence

MPNGAVADPS FLAFPIPCSL PNSSEFSNSI GKMDGYREAC LLGDSFDPNG VVRMREDEYD  60
SRSGSDNIDG AVSGDDQDAN DERRRKRKKY HRHTPHQIQE LEIFFKECPH PDDKQRSELS  120
RRLGLESKQV KFWFQNRRTQ MKTQIERHEN AILKHENDKL RAENSVMKDA ISNPTCNTCG  180
GPSIPVHLSF EEHQLRIDNA RLRDELHRLY TVTNKFLGWP VLPFVNHSSS VSSDSCLELS  240
VGRNGMGNVS NISDPIPMGL NLGNGLFNGG PVMPISKSQM GMPGNDIPID RTIYVDLALA  300
AMDELVKMAQ IDTPLWVRSR DSSGKETLNF DEYSRTFPSS AAMQHTNWTT EATRDTTMVI  360
INSMALIETL MDANRWAEMF PCLIARATTI DVISNGMGGT RNGSLQLMHA ELRVLSPLVP  420
VRTLKFLRFC KQHADGLWAV VDVSLGEGAD ADMFFSCRRL PSGCIVQDMP NGFSKVTWVE  480
HTEYDETVVH QLYRQIISWG IGFGSQRWLA TLQRQCDCLA ILMSSTEDPA GISPHGRRSM  540
LKLSQRMVDN FCSGICTSTL HKWDKLVVGN ISEDVKMMAR NSINDPGEPP GIVLSAATSV  600
WMPVTQQRLF AFLQDECLRS EWDILSNGRP MIEMLRISKG QGLDNRVSLL RANPMNANEN  660
TMLILQESWT DISGSLIVYA PVDAASINLV MRGGDSAYVS LLPSGFAILP DGPSIYASTN  720
NDKDGSIMSD INSGYAGGCL LTVAFQILVN NLPTAKLTVE SVETVNNLIS CTIQKIKVAL  780
RVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	89	RRRKRKK
2	85	89	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein