PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022945116.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | NF-YC | ||||||||
Protein Properties | Length: 296aa MW: 32724.3 Da PI: 4.9014 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 61.3 | 1.9e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ +fdfl div r XP_022945116.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSFHLKHCVQSYSVFDFLRDIVSR 86 5789**************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSFHLKHC VQSYSVFDFL RDIVSRVPDY GHGHSDGAVD DRKRRKPLGD EGNDIDELKK 120 IRMHDMSHGS TGRGRGRGRG RGRGRPARTA ERDNIPPNPE ADACTSIENR NKSPNPDVQM 180 EHHVEPSKTS KEVSEEANQA IQNFDLNADV VNTNEDSNKT VAAAAAAIIP EVPVEPTGPT 240 TTESEAKAAA PAAAAADDEF PAWPLSDVDK MAIDPLQYAH LSTRVDEEEE DYDEEE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 142 | RGRGRGRGRG |
2 | 133 | 143 | RGRGRGRGRGR |
3 | 135 | 144 | RGRGRGRGRG |
4 | 135 | 145 | RGRGRGRGRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 4e-70 | NF-YC family protein |