PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022944693.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 610aa MW: 67355.4 Da PI: 6.8566

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022944693.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.9	2.9e-14	180	239	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_022944693.1 180 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 239 57*****************666664477446******99***********98 PP
2	AP2	46.9	6.9e-15	284	333	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_022944693.1 284 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 333 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MGSMNSNNWL SFPLSPTNPS LPPHLQTPTH AHHFSLGNLE NDNMDIPFQT HEWNLISGQG 60 GGEVPKVADF LGVSKAENEA DLIGFNQIHE ANDTDYLFPI TRLVPLQQHP TPAAAPINMD 120 STTNYDPQDN SNSLQSLTLS MGSGKPSTCE TSSTPDNANN NTTLDVTPRR TLDTFGQRTS 180 IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEDKAARAY DLAALKYWGT 240 STTTNFPISN YEKEVEEMKH MTRQEFVASI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI 300 GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI LESNTLPIGG 360 GAAKRLKEAQ AIESSRKRDE MIALGSSSSF QYGSSSSSSN SSNHRLQQQQ QPSYPLLQQP 420 NLNMDHHHHH HHHHLQTQPF LSLQNHHDIS QYTNDPSSFH HSSTYMHTQL QLHHHQSDNA 480 PYPNNNNNNH QFYGGAGGGY LHNHPGLLHG MINMGGGGGG SNLESSNNNN NALSSANHFE 540 NPNNNSNGGY LGNAFGMGST SATANNGAPA EEYALVKVDY DMPPNAGGYG SWSGDSVQGS 600 NPGVFSMWND

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MGSMNSNNWL SFPLSPTNPS LPPHLQTPTH AHHFSLGNLE NDNMDIPFQT HEWNLISGQG  60
GGEVPKVADF LGVSKAENEA DLIGFNQIHE ANDTDYLFPI TRLVPLQQHP TPAAAPINMD  120
STTNYDPQDN SNSLQSLTLS MGSGKPSTCE TSSTPDNANN NTTLDVTPRR TLDTFGQRTS  180
IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEDKAARAY DLAALKYWGT  240
STTTNFPISN YEKEVEEMKH MTRQEFVASI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI  300
GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI LESNTLPIGG  360
GAAKRLKEAQ AIESSRKRDE MIALGSSSSF QYGSSSSSSN SSNHRLQQQQ QPSYPLLQQP  420
NLNMDHHHHH HHHHLQTQPF LSLQNHHDIS QYTNDPSSFH HSSTYMHTQL QLHHHQSDNA  480
PYPNNNNNNH QFYGGAGGGY LHNHPGLLHG MINMGGGGGG SNLESSNNNN NALSSANHFE  540
NPNNNSNGGY LGNAFGMGST SATANNGAPA EEYALVKVDY DMPPNAGGYG SWSGDSVQGS  600
NPGVFSMWND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein