PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022944551.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 478aa MW: 52645.9 Da PI: 6.4074

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022944551.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.8	4.8e-17	159	208	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_022944551.1 159 SQYRGVTYYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDKAAIKFRG 208 78*****************......55**********************997 PP
2	AP2	40.3	7.8e-13	251	301	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + rk+ +lg f+++ eAa+a++ a+++ +g XP_022944551.1 251 SKYRGVTLHK-CGRWEARMGQFL---GRKYMYLGLFDSEIEAARAYDIAALRCNG 301 89******.7**55532...26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MLNLNHDVVP SEMVTENFLN LPANRMETAG CFNSSPVVNG DPSASTTNVD EVFPFTFGKN 60 SAVQESSTVK SLSISDDHRD QTMELFPLTD GLNSISDDHR DQTMEFFPLT EGLNSSSSTQ 120 KQWPGVSPSE FKHGDGGAPA QPQDQAMRKN RRGPRPRSSQ YRGVTYYRRT GRWESHIWDC 180 GKQVYLGGFD TAHAAARAYD KAAIKFRGVD ADINFSVRTY EEDIKQMSNI TKEELIHNLR 240 RRSNGFTRGS SKYRGVTLHK CGRWEARMGQ FLGRKYMYLG LFDSEIEAAR AYDIAALRCN 300 GKEAVTNFDP SSYMSEMAAE TDTGEDNQSL DLSLRIAPPN HSDPQSESIR MFGNGCHLSS 360 PDVVVDGRTT LDNSVSAAIG SSQPYGYAVP SNSCFYTISR DRAAETRMGE WQIHGHSNGL 420 TSVPFFSAAA SSGFLSSSSS SSSSSSSSAI SSSAVGEIHF SAIFHHHDSN LSNFYCRN

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MLNLNHDVVP SEMVTENFLN LPANRMETAG CFNSSPVVNG DPSASTTNVD EVFPFTFGKN  60
SAVQESSTVK SLSISDDHRD QTMELFPLTD GLNSISDDHR DQTMEFFPLT EGLNSSSSTQ  120
KQWPGVSPSE FKHGDGGAPA QPQDQAMRKN RRGPRPRSSQ YRGVTYYRRT GRWESHIWDC  180
GKQVYLGGFD TAHAAARAYD KAAIKFRGVD ADINFSVRTY EEDIKQMSNI TKEELIHNLR  240
RRSNGFTRGS SKYRGVTLHK CGRWEARMGQ FLGRKYMYLG LFDSEIEAAR AYDIAALRCN  300
GKEAVTNFDP SSYMSEMAAE TDTGEDNQSL DLSLRIAPPN HSDPQSESIR MFGNGCHLSS  360
PDVVVDGRTT LDNSVSAAIG SSQPYGYAVP SNSCFYTISR DRAAETRMGE WQIHGHSNGL  420
TSVPFFSAAA SSGFLSSSSS SSSSSSSSAI SSSAVGEIHF SAIFHHHDSN LSNFYCRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	2e-78	AP2 family protein