PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022944391.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family M-type_MADS
Protein Properties Length: 310aa    MW: 34954.9 Da    PI: 6.1727
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022944391.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.11e-221461249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + e ks +qvtfskRr+g++ KA ELSvLC+ae+a++++ss++kly++
  XP_022944391.1 14 KLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVASSRNKLYTF 61
                    57899******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MKKSLGRRKI EIKKLEKKSS QQVTFSKRRA GLFNKAAELS VLCGAEIAIL VASSRNKLYT  60
FGHPNVESLL DRFLTGNSAP PKPAEAYLPL EELNRDFDDV AAEYDIEKRR TAERLSNDRF  120
WWDEPLESMK IDDLKRFRSS LVDLRGKVAE RVEKFTAMRK EGSPLPALQP STPPSIDLVE  180
NLQRPPTPPP SIGLFGNLQW PLTPPSIDLV ENLERLPTSP SIDFFENLQW PSTPPSIDLV  240
ENLQRPQTPP SIGLFEKIQW PSTPPSIDLV ESLHWSPMPS IHLAENDQCL LSSFQISGNH  300
SVARGLNMLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-27M-type_MADS family protein