PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022944242.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 318aa MW: 35281.2 Da PI: 8.9208

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022944242.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.5	2.7e-06	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H XP_022944242.1 45 FVCEICGKGFQRDQNLQLHRRGH 67 89*******************88 PP
2	zf-C2H2	15.2	5.9e-05	121	143	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+ks+ +s+ k H +t+ XP_022944242.1 121 WKCEKCSKSYAVQSDWKAHSKTC 143 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MISKMAADGS NPSLAKKKRS LPGTPDPEAE VIALSPKTLM ATKRFVCEIC GKGFQRDQNL 60 QLHRRGHNLP WKLKQRSNKE AKKRVYVCPE TSCVHHHPSR ALGDLTGIKK HFCRKHGEKK 120 WKCEKCSKSY AVQSDWKAHS KTCGTREYKC DCGTLFSRRD SFISHRAFCD ALAEEAARVS 180 NAMAQHWVMY CDPVCQNPAV GDYYSHQLQE VNQTHMGTMS ATALLQKAAE IGAISSPGHS 240 VILEEGFLFN NGSEFCNSGT TNPIVVIGNE NEMYTAKRRR TQSEVECGAT GAAGLTRDFL 300 GVGAQTLCHS SPTIKEWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-105	C2H2 family protein