PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022944016.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 782aa MW: 86676.2 Da PI: 7.0331

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022944016.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.5	2.6e-23	170	271	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv++++L +gD v+F + + XP_022944016.1 170 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQLRP--SQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFL--RGE 260 99**************************9887775..458********************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ XP_022944016.1 261 NGELRLGIRRA 271 9999**996 PP
2	Auxin_resp	119.3	3.1e-39	296	377	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+stks+F+v+YnPra +++Fvv+++k++k+++++v vG+Rfkm+fe++ds+err+ G+vvg+ d+dp+rW+nSkWr+L XP_022944016.1 296 VVKAVSTKSAFDVFYNPRAYHAQFVVSCQKYVKSINNPVNVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWSNSKWRCL 377 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence
MEIDLNQTAS EVGKNAYCHG NCEEGRCNCC LSSSTSSCSS NSSSTPASSS TYLELWHACA 60 GPLTSLPKKG NAVVYFPQGH LEQIASASPF SPMNMATFDL QPQILCKVIN VHLLANKEND 120 EVYTQLTLLP LPELLGTGVE GKELEELALN RAADGDGSGG SPTRSTPHMF CKTLTASDTS 180 THGGFSVPRR AAEDCFPPLD YTQLRPSQEL IAKDLHGVEW RFKHIYRGQP RRHLLTTGWS 240 IFVSQKNLIS GDAVLFLRGE NGELRLGIRR AVRPRNGLPD SIVGNQNSCA NDLTRVVKAV 300 STKSAFDVFY NPRAYHAQFV VSCQKYVKSI NNPVNVGTRF KMRFEMDDSP ERRFNGVVVG 360 IGDMDPFRWS NSKWRCLTVR WDKDSDHQER VSPWEIDPSV SLPPLSVQSS PRLKKLRTSL 420 QEAPPNNAFN GRGGFMDFED SVRSSKVLQG QENVGMVSPF YGCDTAKRSL EFEVRSSAQQ 480 NQASGGVEKL NIGDYVTSFT GFMESDRFLK VLQGQEICSL RPQTRKPEPS LGVWGKFNLS 540 DNSFNPFQSP NSSFYHMASN GARNMYYPHR DIYSTGQAAM MSSNDINFPR ESALSNPSAK 600 MERANSTPPT LGSNMRNSKD ENVNENRTGC KLFGFSLTTE TATNMQSSGK RSCTKVRKVH 660 KQGSLVGRAI DLSRLNGYTD LLSELERLFS MEGLLKDPDK GWRVLYTDNE NDVMVVGDYP 720 WHDFCDAVSK IHIYTEEEVE KMTNGVISDD TQSCLDQAAL CMEASKSSSV GQPDSSPTVV 780 RV

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence

MEIDLNQTAS EVGKNAYCHG NCEEGRCNCC LSSSTSSCSS NSSSTPASSS TYLELWHACA  60
GPLTSLPKKG NAVVYFPQGH LEQIASASPF SPMNMATFDL QPQILCKVIN VHLLANKEND  120
EVYTQLTLLP LPELLGTGVE GKELEELALN RAADGDGSGG SPTRSTPHMF CKTLTASDTS  180
THGGFSVPRR AAEDCFPPLD YTQLRPSQEL IAKDLHGVEW RFKHIYRGQP RRHLLTTGWS  240
IFVSQKNLIS GDAVLFLRGE NGELRLGIRR AVRPRNGLPD SIVGNQNSCA NDLTRVVKAV  300
STKSAFDVFY NPRAYHAQFV VSCQKYVKSI NNPVNVGTRF KMRFEMDDSP ERRFNGVVVG  360
IGDMDPFRWS NSKWRCLTVR WDKDSDHQER VSPWEIDPSV SLPPLSVQSS PRLKKLRTSL  420
QEAPPNNAFN GRGGFMDFED SVRSSKVLQG QENVGMVSPF YGCDTAKRSL EFEVRSSAQQ  480
NQASGGVEKL NIGDYVTSFT GFMESDRFLK VLQGQEICSL RPQTRKPEPS LGVWGKFNLS  540
DNSFNPFQSP NSSFYHMASN GARNMYYPHR DIYSTGQAAM MSSNDINFPR ESALSNPSAK  600
MERANSTPPT LGSNMRNSKD ENVNENRTGC KLFGFSLTTE TATNMQSSGK RSCTKVRKVH  660
KQGSLVGRAI DLSRLNGYTD LLSELERLFS MEGLLKDPDK GWRVLYTDNE NDVMVVGDYP  720
WHDFCDAVSK IHIYTEEEVE KMTNGVISDD TQSCLDQAAL CMEASKSSSV GQPDSSPTVV  780
RV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein