PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022943975.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family NF-YC
Protein Properties Length: 280aa    MW: 30979.4 Da    PI: 4.6667
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022943975.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC60.34.2e-196861898
           NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    ++++P arikki++adedv +i+  +P l+ska elf+ +l  r++  + +   +t++   ++++++  ++fdfl d+v +
  XP_022943975.1  6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTMNSLHLKQCIQTFNVFDFLRDVVGK 86
                    5789*************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MKKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKRGAK  60
TMNSLHLKQC IQTFNVFDFL RDVVGKVPDL GASDAAEDRC ISKRRKVEDE DGGNDSEEES  120
KRSKTTEAGH NISGRGRGRG RGRGRGRSSR HSEKDTAIHS DNLEEDLEIP SHPGDNLDKT  180
VADNGVAEAR MENDNIPIDK AVEPSVRNFD LNVNLDEDGD STSIPVAAST GSPVKPLTDS  240
KHDEYPGWSV AEMEKMVIDP IQLANLNKSI DDEEDYDEEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135144RGRGRGRGRG
2135145RGRGRGRGRGR
3137146RGRGRGRGRG
4137147RGRGRGRGRGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.17e-56NF-YC family protein