PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022943945.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 733aa    MW: 82716.2 Da    PI: 5.1006
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022943945.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.99.7e-1083567301373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avss+d + a +lL++++++++ +gd  qR+a++f +AL+ar+++++++      + ++s+ + ++ l+a+++    +P+ k+s 
  XP_022943945.1 356 LRNLLILCAQAVSSDDRRIAYELLKQIRQHSTTTGDGSQRMAHFFSNALEARMVGTGTGSRIYYDSLAQSNISAADMLKAYQAHLSSCPFKKLSL 450
                     6899**************************************************94444333344455554559********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +   ++Il+ +e+++ +H+iDf+i +G+ Wp L+q La  p+gpp+lRiTg++ p +g   +e+++e g+rLak++e+++vpf++++++++++e+
  XP_022943945.1 451 FFMIKMILKVAENAKSLHVIDFGICYGFLWPMLIQFLALLPDGPPKLRITGIDYPLPGfrPEEKIQESGRRLAKYCERFKVPFQYQAIASNNWET 545
                     *******************************************************99999****************************999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++++++l+Vn+ ++  +llde+v+ +s+rd vL+l+++++P+++v++  + ++n++ F +rf eal ++sal+d+l+++lpr+seer+
  XP_022943945.1 546 IRVEDLKLDSNDVLVVNCFYRFNSLLDETVEESSPRDIVLRLIRKMNPNIFVHSVVNGSYNAPFFITRFREALFHFSALYDALDVNLPRDSEERM 640
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ++Ere+lgr+i+nvvaceg +r+er e +++W+ r ++aGFk++pl+++++++ ++ l  ++ + + ++e++g++++gWk+r +++ ++W
  XP_022943945.1 641 MLEREFLGRQIMNVVACEGVQRVERPEPYKQWQVRCMRAGFKQLPLDKEIMCKFRTKLTSHYHKDFVLDEDEGWMLQGWKGRIVYASCCW 730
                     **************************************************************888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    
MDPNLNAFTD RMADYQTSLT QSYDDGFRLN DFVFNDPSPD FVPFVDNSLF PYQPDPNKFS  60
GAVDLNLGVV ASGQSPDGDS SSDELDFRES VLKYISQILM EENLEEKPCM FYDPLGLENT  120
EKSFYDALGK NYPPPSPNQP PLDCESSEDV CRGSDSDRTS TAVSAANSNS PDPQWVVDPG  180
ESKSSILTRS IPSSSYQSSL TINSHELVTE LLAQNIFSDS TSILQYQKGL EEASKFLPVG  240
NQLNIDLSSG KFTGVAPKVT DTTDNSPNGS KRRKNRGPEA VDLDSEGRKN KHATIYGDEE  300
ELTDMFDKVL LHDCGSEASA NGGCEKLQNN RQVHGGSNAG KAREKKQDKR NNSVDLRNLL  360
ILCAQAVSSD DRRIAYELLK QIRQHSTTTG DGSQRMAHFF SNALEARMVG TGTGSRIYYD  420
SLAQSNISAA DMLKAYQAHL SSCPFKKLSL FFMIKMILKV AENAKSLHVI DFGICYGFLW  480
PMLIQFLALL PDGPPKLRIT GIDYPLPGFR PEEKIQESGR RLAKYCERFK VPFQYQAIAS  540
NNWETIRVED LKLDSNDVLV VNCFYRFNSL LDETVEESSP RDIVLRLIRK MNPNIFVHSV  600
VNGSYNAPFF ITRFREALFH FSALYDALDV NLPRDSEERM MLEREFLGRQ IMNVVACEGV  660
QRVERPEPYK QWQVRCMRAG FKQLPLDKEI MCKFRTKLTS HYHKDFVLDE DEGWMLQGWK  720
GRIVYASCCW VPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein