PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022943881.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 538aa    MW: 60025.9 Da    PI: 6.0335
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022943881.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.89e-1381695382374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L++cA+avs++d+ +aq+l+ +l++++s  g+pmqRl ay++e+L arla+s+s +yk+l+++e +    +e l+++++++ev+P++kf+++
  XP_022943881.1 169 KKILIACAKAVSDNDALMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPA---RAELLSYMHILYEVCPYFKFGYM 260
                     789*****************************************************************9...89********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea++ e+rvHiiDf+isqG+QW++L+qa+as+p+ pp++RiTg+++p+s   +   l  +g+rL+k+A+ ++vpfef+  +a + +d+
  XP_022943881.1 261 SANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFASKPGRPPHIRITGIDDPASAyaRGGGLDIVGRRLSKLAKLCNVPFEFHS-AAISGSDV 354
                     *******************************************************9999999************************.8999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + ++L++++gEalaVn++++lh+++desvs+e++rd++L+lvk+lsPkvv+vveqe+++n++ F  rf+e+l+yy a+f+s++++lpr+++eri+
  XP_022943881.1 355 QQKNLSIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTVVEQESNTNTAAFYPRFIETLDYYNAMFESIDVTLPRQHKERIN 449
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+++l+re+vn++acegaer+erhe l+kWr r+ +aGF+++pls+ +++++k+ll +++++ yr+ee++g+l+lgW+dr Lv+ +aW+
  XP_022943881.1 450 IEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTAYPLSSLVNATIKTLLDNYSNR-YRIEEREGALYLGWMDRDLVASCAWK 538
                     *************************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    
MQASQLHRDS HMSKRLCYQP IQGADTYFFS QLCSSAGNQR AQLNVEDIGD QYCTLESSSG  60
SQGYAAYNST STVTCSSNGS TVSQQDSCSN PSDQHNSIDY AYGSPVSGSS ITDDLSDFRH  120
KLRELESVML GPDSDVIDSF DSIFQEGTEN PEMGTWGQVM DVITKGSLKK ILIACAKAVS  180
DNDALMAQWL MDELRKMVSV CGEPMQRLGA YMLEGLVARL ASSGSCIYKS LRCKEPARAE  240
LLSYMHILYE VCPYFKFGYM SANGAIAEAM KDEDRVHIID FQISQGTQWI TLIQAFASKP  300
GRPPHIRITG IDDPASAYAR GGGLDIVGRR LSKLAKLCNV PFEFHSAAIS GSDVQQKNLS  360
IRRGEALAVN FAFMLHHMPD ESVSTENHRD RLLRLVKGLS PKVVTVVEQE SNTNTAAFYP  420
RFIETLDYYN AMFESIDVTL PRQHKERINI EQHCLAREVV NILACEGAER VERHELLGKW  480
RLRFAMAGFT AYPLSSLVNA TIKTLLDNYS NRYRIEEREG ALYLGWMDRD LVASCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein