PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022943685.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 436aa MW: 47599.1 Da PI: 7.3302

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022943685.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.2	5.6e-13	47	72	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C+yG++C+F+H+ XP_022943685.1 47 PGEPDCLYYMRTGSCSYGSNCRFNHP 72 5789*********************9 PP
2	zf-CCCH	36.1	1.1e-11	91	115	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_022943685.1 91 QPDCEYFLKTGTCKYGGSCKYHHPR 115 789********************96 PP
3	zf-CCCH	37.2	4.9e-12	138	160	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G +CkF+H++ XP_022943685.1 138 SCPYYLRTGSCKFGVSCKFNHPQ 160 6********************97 PP
4	zf-CCCH	39.8	7.6e-13	278	303	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ CkF+H++ XP_022943685.1 278 DQPECRYFMNNGTCKYGSDCKFHHPK 303 689*********************96 PP
5	zf-CCCH	33.8	5.6e-11	321	345	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+++ +G CkyG++CkF H+ XP_022943685.1 321 GQAVCSYYNMYGLCKYGPSCKFDHP 345 7899********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MPDNLQVQRN AVPNQSSDIS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS 60 CSYGSNCRFN HPVFVAQGAM YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA 120 GPVRFNILGL PMRQEEKSCP YYLRTGSCKF GVSCKFNHPQ PSPVGNMLHP ARPGALGSAG 180 TPFMPASGVP YTGAVPAWSL PRVQYMPGPC VQGQQSFVPV LVSPSQGAIA AQDWNTYVGN 240 VSPVLPNLGY NSINLEEPYS NGQLASSTAT PTLPDRPDQP ECRYFMNNGT CKYGSDCKFH 300 HPKQRIAQSA TNPLGLPSRP GQAVCSYYNM YGLCKYGPSC KFDHPSATYP YNYGFTLPVL 360 DSSFMKYPSN NFTMSSHEAL PQTVSKSSEW VQKADPSNNK RRTTNSIVVV DSTAEEATTV 420 SCSLPGGSET LQDQSG

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MPDNLQVQRN AVPNQSSDIS EALWRLEISD NQDGGDAAES SPYPDRPGEP DCLYYMRTGS  60
CSYGSNCRFN HPVFVAQGAM YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA  120
GPVRFNILGL PMRQEEKSCP YYLRTGSCKF GVSCKFNHPQ PSPVGNMLHP ARPGALGSAG  180
TPFMPASGVP YTGAVPAWSL PRVQYMPGPC VQGQQSFVPV LVSPSQGAIA AQDWNTYVGN  240
VSPVLPNLGY NSINLEEPYS NGQLASSTAT PTLPDRPDQP ECRYFMNNGT CKYGSDCKFH  300
HPKQRIAQSA TNPLGLPSRP GQAVCSYYNM YGLCKYGPSC KFDHPSATYP YNYGFTLPVL  360
DSSFMKYPSN NFTMSSHEAL PQTVSKSSEW VQKADPSNNK RRTTNSIVVV DSTAEEATTV  420
SCSLPGGSET LQDQSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-110	C3H family protein