PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022943344.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

GRAS

Protein Properties

Length: 616aa MW: 69085.1 Da PI: 5.1101

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022943344.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	202.8	2e-62	382	577	1	198
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d+++a++lL++++++asp gd +qRla+yf+ +L+arla+++s++yk l ++ts +++l+a++l+ ++P+ k+s+ XP_022943344.1 382 LRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGNQRLASYFADGLEARLAGTGSQIYKGLINKRTS---AADVLKAYHLYLAACPFRKISN 473 6789**********************************************************888888...89**************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 +t N++ + a e+++++H+iDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++g +e++eetg+rLa +Ae+++vpfe+n+ +ak++e+ XP_022943344.1 474 FTSNRTTMIASETATKLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGfrPAERVEETGRRLAAYAETFNVPFEYNA-IAKKWET 567 *****************************************************9*************************.7** PP GRAS 189 leleeLrvkp 198 +++e+L++++ XP_022943344.1 568 ITVEDLNIDQ 577 ****9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MDPRLRRHGG SLNGILLDNG SFLVQSQEDG IGSIFQNTIM SHSFQEFNCL PPDPSPSNIA 60 SSSSVITSSS NDASHEEDYL EDCDFSDAVL TFINQILMEE DMEDKTCMLQ DSLDLQAAEK 120 PFYEVLGKKY PPSPEPNRSL GNQYSDSFNE ELCGDSSNYL IGYNNTSYYG DDNAFETQSG 180 DVFRIRSTLG DTISPSSNSS SNRIINEDDG WVDFSNNAIR VPEPNNRTQS IWQFQKGLEE 240 ASKFLPGGNN LCLDFEGNES ATQGLDEGTS QMYVKAARND QRKTSSLESR VRKNLHDEDG 300 DLEEERSSKQ AAISTESTLR SKMFDIVLLC SAGEGHDRLV SFRQELQNAK IKSMLQTGQL 360 KESNGGRGRR KKQSGKKEVV DLRTLLISCA QAVAADDHRN ASELLKQVRQ HASPFGDGNQ 420 RLASYFADGL EARLAGTGSQ IYKGLINKRT SAADVLKAYH LYLAACPFRK ISNFTSNRTT 480 MIASETATKL HVIDFGILYG FQWPTLIQRL SWRKGGPPKL RITGIEFPQP GFRPAERVEE 540 TGRRLAAYAE TFNVPFEYNA IAKKWETITV EDLNIDQDFE RPCFTFLLSL ICLKLLYLVR 600 IGRECYWRER SLVGRL

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MDPRLRRHGG SLNGILLDNG SFLVQSQEDG IGSIFQNTIM SHSFQEFNCL PPDPSPSNIA  60
SSSSVITSSS NDASHEEDYL EDCDFSDAVL TFINQILMEE DMEDKTCMLQ DSLDLQAAEK  120
PFYEVLGKKY PPSPEPNRSL GNQYSDSFNE ELCGDSSNYL IGYNNTSYYG DDNAFETQSG  180
DVFRIRSTLG DTISPSSNSS SNRIINEDDG WVDFSNNAIR VPEPNNRTQS IWQFQKGLEE  240
ASKFLPGGNN LCLDFEGNES ATQGLDEGTS QMYVKAARND QRKTSSLESR VRKNLHDEDG  300
DLEEERSSKQ AAISTESTLR SKMFDIVLLC SAGEGHDRLV SFRQELQNAK IKSMLQTGQL  360
KESNGGRGRR KKQSGKKEVV DLRTLLISCA QAVAADDHRN ASELLKQVRQ HASPFGDGNQ  420
RLASYFADGL EARLAGTGSQ IYKGLINKRT SAADVLKAYH LYLAACPFRK ISNFTSNRTT  480
MIASETATKL HVIDFGILYG FQWPTLIQRL SWRKGGPPKL RITGIEFPQP GFRPAERVEE  540
TGRRLAAYAE TFNVPFEYNA IAKKWETITV EDLNIDQDFE RPCFTFLLSL ICLKLLYLVR  600
IGRECYWRER SLVGRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-133	GRAS family protein