PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022943158.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 699aa    MW: 78125.6 Da    PI: 7.3881
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022943158.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.1e-24129229198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +
  XP_022943158.1 129 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELIAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGE 219
                     99****************************9643..445569************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_022943158.1 220 NGELRVGVRR 229
                     999*****98 PP
2Auxin_resp101.41.1e-33255333182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+haa+t + F v+Y+Pra  s+F v+++k+++a+++k+ vGmRfkm+fe+eds+err+sGt++gv d++p  WpnS+WrsL
  XP_022943158.1 255 ASHAAATLTRFVVYYKPRA--SQFLVSLSKYKEAMNTKFLVGMRFKMRFEGEDSPERRFSGTIIGVDDISP-YWPNSQWRSL 333
                     689***************8..9************************************************9.9********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    
MANRGGGSFS PSNVSSQGSG RDGLYVELWK ASAGPLVEVP RVHEHVFYFP QGHMEQLEAS  60
TNQELNQKLP SFNLPSKILC HVVDVRLLAE QETDEVYAQI SLIPEGNQEE PATPGPSPGE  120
CRKSKVHSFC KVLTASDTST HGGFSVLRKH ATECLPPLDM TQQTPTQELI AKDLHGYEWR  180
FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DSFVFLRGEN GELRVGVRRL SRQQSTMPSS  240
VISSHSMHLG VLATASHAAA TLTRFVVYYK PRASQFLVSL SKYKEAMNTK FLVGMRFKMR  300
FEGEDSPERR FSGTIIGVDD ISPYWPNSQW RSLRVQWDEL ASIQRPERVS PWEIEPFVAP  360
ASQSIPQSIS VKNKRPRPPL DIPDSDNSTV TTLRHPVSTQ SYDDKTQLSV PAGWHYKQTD  420
ISSNGNSVSR THNEGSWLTV PNGSVSQHRL KDSTEDHKSN SVWSAVFPGV PTAHSTCPTP  480
RTSNPMSDQI NEFGEEGRKT EVAPSCRLFG IELIDHSKRP VPPERTADQS NSAANEVTES  540
HVNTLLSSNA EQQGSNLPKA SSKERKLGLL QALPKEIQHK HNASTNCRSR TKVQMQGMAV  600
GRAVDLTTLV GYDQLIDEME KMFDIKGELR PRDKWEIVFT DDEGDTMLMG DYPWQEFCNM  660
VRRIYIWSSQ DVKTSSGRRL TMSAIEFDGT AITSESADS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374378KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein