PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022942874.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 513aa MW: 56427.2 Da PI: 6.7111

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022942874.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.6	1.8e-14	235	294	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_022942874.1 235 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 294 57*****************666664478446******99***********98 PP
2	AP2	50.2	6.6e-16	337	388	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_022942874.1 337 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 388 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MAPATNWLSF SLSPIEMLRS ADSQFVPYET SSTASPHYLL DNFYSNNGWS NSTNAHPKSS 60 SQLFFMDGDE NNEVIKEDHH NQSTPAIYTS YLHPQTHHQP KLEDFLGDSS SMVRYSDSQT 120 ETQDSSLTHI YDHGSAPYFG DQQDLKTIAA FRAFSGNSGS EVDDSASMGR TQIAAGAHSI 180 ESSVRNELGT FSSCPTGALS LAVAQSSDTV AAGGVVAVDS DSSKKIADTF GQRTSIYRGV 240 TRHRWTGRYE AHLWDNSCRR EGQARKGRQV YLGGYDKEDK AARAYDLAAL KYWGPTATTN 300 FPVSNYAKEL EEMKHVTKQE FIASLRRKSS GFSRGASIYR GVTRHHQQGR WQARIGRVAG 360 NKDLYLGTFA TEEEAAEAYD IAAIKFRGLN AVTNFEMNRY DVEAIAKSAL PIGGAAKRLK 420 LCLESDQKQI SNHDQAAQCS SGSNSINFGA PIQSMPPIPC GIPYDTAAML YHHNYFHHLQ 480 PNPLGSSEST TPAIGASTMA PQAAEFFVWP HQY

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MAPATNWLSF SLSPIEMLRS ADSQFVPYET SSTASPHYLL DNFYSNNGWS NSTNAHPKSS  60
SQLFFMDGDE NNEVIKEDHH NQSTPAIYTS YLHPQTHHQP KLEDFLGDSS SMVRYSDSQT  120
ETQDSSLTHI YDHGSAPYFG DQQDLKTIAA FRAFSGNSGS EVDDSASMGR TQIAAGAHSI  180
ESSVRNELGT FSSCPTGALS LAVAQSSDTV AAGGVVAVDS DSSKKIADTF GQRTSIYRGV  240
TRHRWTGRYE AHLWDNSCRR EGQARKGRQV YLGGYDKEDK AARAYDLAAL KYWGPTATTN  300
FPVSNYAKEL EEMKHVTKQE FIASLRRKSS GFSRGASIYR GVTRHHQQGR WQARIGRVAG  360
NKDLYLGTFA TEEEAAEAYD IAAIKFRGLN AVTNFEMNRY DVEAIAKSAL PIGGAAKRLK  420
LCLESDQKQI SNHDQAAQCS SGSNSINFGA PIQSMPPIPC GIPYDTAAML YHHNYFHHLQ  480
PNPLGSSEST TPAIGASTMA PQAAEFFVWP HQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	0.0	AP2 family protein