PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022942713.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 445aa MW: 47812.6 Da PI: 9.93

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022942713.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00043	209	231	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F+ ++ + H + H XP_022942713.1 209 TCHKCGEQFNKWDAAEAHHLSkH 231 7*****************98877 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MPTVWLSLKK SLHCKSGPSE VHDPKSRRNL GAILTRKTGG GRSGCSRSIA NLKDVIHGGS 60 KRHLDKPPSC SPRSIGSSEF LNPITHEVIL TNSRCELKIT GFHGAFPPDV PSSADEPLTD 120 RPAASTFVGT LTPGTPGPGG HPTMHYFNPS FRSSSRKFPF REGFVSSNKS GGGGGARSLG 180 GGGGGGVHTS NRISLETEIG GNRSSSAVTC HKCGEQFNKW DAAEAHHLSK HAVTELVEGD 240 SSRKIVEIIC RTSWLKSENQ SGRIERVLKV HNMQRTLARF EEHRETVKIK ASKLPKKHPR 300 CLADGNELLR FYGTTVACSL GLNGSSSLCI SEKCCVCRII RNGFSAKTEM KEGIGVFTTS 360 TSARAFTSIE VSGGGEEGGM VRKAMIVCRV IAGRVHRPLE NIQEMAGQTG FDSLAGKVGL 420 HSNIEELYLL NPRALLPCFV VICKA

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MPTVWLSLKK SLHCKSGPSE VHDPKSRRNL GAILTRKTGG GRSGCSRSIA NLKDVIHGGS  60
KRHLDKPPSC SPRSIGSSEF LNPITHEVIL TNSRCELKIT GFHGAFPPDV PSSADEPLTD  120
RPAASTFVGT LTPGTPGPGG HPTMHYFNPS FRSSSRKFPF REGFVSSNKS GGGGGARSLG  180
GGGGGGVHTS NRISLETEIG GNRSSSAVTC HKCGEQFNKW DAAEAHHLSK HAVTELVEGD  240
SSRKIVEIIC RTSWLKSENQ SGRIERVLKV HNMQRTLARF EEHRETVKIK ASKLPKKHPR  300
CLADGNELLR FYGTTVACSL GLNGSSSLCI SEKCCVCRII RNGFSAKTEM KEGIGVFTTS  360
TSARAFTSIE VSGGGEEGGM VRKAMIVCRV IAGRVHRPLE NIQEMAGQTG FDSLAGKVGL  420
HSNIEELYLL NPRALLPCFV VICKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-115	C2H2 family protein