PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022942662.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 552aa MW: 59277.6 Da PI: 9.3396

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022942662.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_022942662.1 63 FICEVCNKGFQREQNLQLHRRGH 85 89*******************88 PP
2	zf-C2H2	12.6	0.00042	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_022942662.1 139 WKCDKCSKRYAVQSDWKAHSKTC 161 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MAASSSSSLP VYGVGEESTP QMRPPSNSST KKKRNQPGTP SKYYPDAEVI ALSPKTLMAT 60 NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKSTKDPK RKVYLCPEPT CVHHHPSRAL 120 GDLTGIKKHY SRKHGEKKWK CDKCSKRYAV QSDWKAHSKT CGTREYRCDC GTLFSRRDSF 180 ITHRAFCDAL AQESARHPPS IGRHLYGAQD HPNIISQSAP GHFTHLLPSS MGSSFRPMSA 240 SGFFLTEQNN QSSFHEDQPN QSQQGFFGNK GFHGVMQFPD MQSHTNNCAS NVFNLGFIPN 300 STTDGTTNLN NNNDTNTIST NLNQFSAANN GNNEAAASNI FAVIGDQMNS AALPSLYSNA 360 SAVGGGGGSG IGGLFPHMSA TALLQKAAQL GSTTSGSNTT STLLRSFGSS SNSGGKVSDR 420 TLFPLGYGGV TFGEHESNLQ DMMNSFGSGS SGSGMFGSGM NSFGGLECSS SRTNMETLED 480 PKLQQDVRGV RMGGTDRLTR DFLGVGQIVR SMSGGGGGYS QKQGAEGMVL EGNERNSAPS 540 SQGFGGGNGN YQ

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MAASSSSSLP VYGVGEESTP QMRPPSNSST KKKRNQPGTP SKYYPDAEVI ALSPKTLMAT  60
NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKSTKDPK RKVYLCPEPT CVHHHPSRAL  120
GDLTGIKKHY SRKHGEKKWK CDKCSKRYAV QSDWKAHSKT CGTREYRCDC GTLFSRRDSF  180
ITHRAFCDAL AQESARHPPS IGRHLYGAQD HPNIISQSAP GHFTHLLPSS MGSSFRPMSA  240
SGFFLTEQNN QSSFHEDQPN QSQQGFFGNK GFHGVMQFPD MQSHTNNCAS NVFNLGFIPN  300
STTDGTTNLN NNNDTNTIST NLNQFSAANN GNNEAAASNI FAVIGDQMNS AALPSLYSNA  360
SAVGGGGGSG IGGLFPHMSA TALLQKAAQL GSTTSGSNTT STLLRSFGSS SNSGGKVSDR  420
TLFPLGYGGV TFGEHESNLQ DMMNSFGSGS SGSGMFGSGM NSFGGLECSS SRTNMETLED  480
PKLQQDVRGV RMGGTDRLTR DFLGVGQIVR SMSGGGGGYS QKQGAEGMVL EGNERNSAPS  540
SQGFGGGNGN YQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-115	C2H2 family protein