PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022942472.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 717aa MW: 80215.8 Da PI: 5.5484

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022942472.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4e-07	120	142	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F Hgp XP_022942472.1 120 VPCIFFQK-GLCLKGDRCAFLHGP 142 79****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence
MVGGGPQVLE QQQQSLPQPL SAADEEAVKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV 60 NPRDCWFWLN GNCLNPKCSF RHPPLDGLVG TPHSTNSSSQ IPSQTSAIPS APVNSSKQGV 120 PCIFFQKGLC LKGDRCAFLH GPSPVPMNKV PQTTANAQTG KPPSVKKVSC GTLRSGQEQK 180 IPRADCSKSI DGAPLKLATK DETVPSNVGN VNEKSGPPAE VADDGSRYKA TNSLPVLNES 240 SLSRASRLQP SHVIDDYGLQ NGKDADEFLR ETSPGFDVLV DDELRGSGYY ESEEQYGRTR 300 GHEGTNMISM NDYEIGHSSD YKMISDVDHD VYNNVIDYDY DSRQGQYGWD RHRSSSEKFS 360 MGSAQMDKRL FPKSNSPEHI QTMDLRHRLN KQRRGNGLRS VINNEHTAGH PEERNYHAPR 420 RDSHPSQENS TSNRLRGRIK LLRIPSPVRN SNLQPERDLN RGRPWGRLLP GRSQSLSHEG 480 SNRDEMKGRL EEDYNNEGRN FNGLSSRRDR MDGTPDFAAP KSLAALKDKH VGTKEQQTLG 540 KRKGSDNEQS GGELSFEGPK SLGEILKKKR QVKSDVDPPV NNDERERCVR SIERSTTPLL 600 KQSGLSSTAK QESNSLEGTK SSPAEAFGLE EENIDVSHHH SSQPMHSTDD HEIEAYDETL 660 EEGHEYEGDD QRDCEYKYEQ VDYGEYNYEE DENINPEEEY MDDEDGDDFA KKIGVMS

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence

MVGGGPQVLE QQQQSLPQPL SAADEEAVKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV  60
NPRDCWFWLN GNCLNPKCSF RHPPLDGLVG TPHSTNSSSQ IPSQTSAIPS APVNSSKQGV  120
PCIFFQKGLC LKGDRCAFLH GPSPVPMNKV PQTTANAQTG KPPSVKKVSC GTLRSGQEQK  180
IPRADCSKSI DGAPLKLATK DETVPSNVGN VNEKSGPPAE VADDGSRYKA TNSLPVLNES  240
SLSRASRLQP SHVIDDYGLQ NGKDADEFLR ETSPGFDVLV DDELRGSGYY ESEEQYGRTR  300
GHEGTNMISM NDYEIGHSSD YKMISDVDHD VYNNVIDYDY DSRQGQYGWD RHRSSSEKFS  360
MGSAQMDKRL FPKSNSPEHI QTMDLRHRLN KQRRGNGLRS VINNEHTAGH PEERNYHAPR  420
RDSHPSQENS TSNRLRGRIK LLRIPSPVRN SNLQPERDLN RGRPWGRLLP GRSQSLSHEG  480
SNRDEMKGRL EEDYNNEGRN FNGLSSRRDR MDGTPDFAAP KSLAALKDKH VGTKEQQTLG  540
KRKGSDNEQS GGELSFEGPK SLGEILKKKR QVKSDVDPPV NNDERERCVR SIERSTTPLL  600
KQSGLSSTAK QESNSLEGTK SSPAEAFGLE EENIDVSHHH SSQPMHSTDD HEIEAYDETL  660
EEGHEYEGDD QRDCEYKYEQ VDYGEYNYEE DENINPEEEY MDDEDGDDFA KKIGVMS