PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022942392.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 684aa MW: 74236.6 Da PI: 7.9136

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022942392.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.6e-08	275	295	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg XP_022942392.1 275 PCPEFRK-GACPKGDSCEYAHG 295 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MCSGSKNKVT SSNSAMDAKF QKLNHGSFFS ASSILLELSA SDDIEGFKRE VEENGLDVDE 60 PSCWYGRGIG SKKMAFEKRT PLMIAAMFGS SKVVKHLIGT GKVDVNRACG SDMVTALHCA 120 TAGGSGSSLE TIKLLLNGSA DVDCVDAYGR KPVDLIVSAC RMVSNSGRKA MEMLLRGDGM 180 AGEGDLSLYL EENQQKIIAS PSAKEGSDKK EYPVDVSLPD INSGMYGTDD FRMYTFKVKP 240 CSRAYSHDWT ECPFVHPGEN ARRRDPKKYP YSCVPCPEFR KGACPKGDSC EYAHGVFESW 300 LHPAQYRTRL CKDETGCNRK VCFFAHKPED LRPVYASTGS GMPSPRSLSS SAADMSTMST 360 LTLGSSSLSL PTTSTPPMSP LASVSSPTNG NLWQNKINLT PPALQLSGSR LKTTLSARDL 420 DFEMELLGLE KNASQLQHQQ QLIDEISRLS TPNYWSGDVS RSAELKPSNL DDMFGSLDSS 480 LLSQLQGGSL KTSQVQSPTG MQMRQNMNQL RASYPANLTS SPVKKPSSFG FDSSSAVAAA 540 VMNSRSAAFA KRSQSFIDRA AVPRLPGFTT AANSAATMSS HLSGWNSPDG KLDWGVHSNN 600 LNKLQKSASF AIRNNGIGGP TTFAPSAGEP DVSWVNSLVK DVPSDSFEQF GAKKRQYNLK 660 REINEMLPSW MEQQLYAEQE QIVA

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MCSGSKNKVT SSNSAMDAKF QKLNHGSFFS ASSILLELSA SDDIEGFKRE VEENGLDVDE  60
PSCWYGRGIG SKKMAFEKRT PLMIAAMFGS SKVVKHLIGT GKVDVNRACG SDMVTALHCA  120
TAGGSGSSLE TIKLLLNGSA DVDCVDAYGR KPVDLIVSAC RMVSNSGRKA MEMLLRGDGM  180
AGEGDLSLYL EENQQKIIAS PSAKEGSDKK EYPVDVSLPD INSGMYGTDD FRMYTFKVKP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPKKYP YSCVPCPEFR KGACPKGDSC EYAHGVFESW  300
LHPAQYRTRL CKDETGCNRK VCFFAHKPED LRPVYASTGS GMPSPRSLSS SAADMSTMST  360
LTLGSSSLSL PTTSTPPMSP LASVSSPTNG NLWQNKINLT PPALQLSGSR LKTTLSARDL  420
DFEMELLGLE KNASQLQHQQ QLIDEISRLS TPNYWSGDVS RSAELKPSNL DDMFGSLDSS  480
LLSQLQGGSL KTSQVQSPTG MQMRQNMNQL RASYPANLTS SPVKKPSSFG FDSSSAVAAA  540
VMNSRSAAFA KRSQSFIDRA AVPRLPGFTT AANSAATMSS HLSGWNSPDG KLDWGVHSNN  600
LNKLQKSASF AIRNNGIGGP TTFAPSAGEP DVSWVNSLVK DVPSDSFEQF GAKKRQYNLK  660
REINEMLPSW MEQQLYAEQE QIVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	1e-175	C3H family protein