PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022942376.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HB-PHD

Protein Properties

Length: 902aa MW: 99136.5 Da PI: 5.0716

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022942376.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.6	2.1e-13	720	770	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ le+L + F++n+yp ++++e LA++lgL+ +qV+ WF N R + XP_022942376.1 720 RLSQPTLERLLASFQENQYPERATKESLARELGLSLKQVSKWFENTRWSTR 770 678999*****************************************8766 PP
2	PHD	36.8	8.9e-13	339	394	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C Cg+ e++++lCdg C++ fH+ Cl+++l ++++p + wlC+ C++k XP_022942376.1 339 FCGKCGSkeLSLENDIILCDGvCDRGFHQFCLEPPLLNSDIPPDdeGWLCPGCDCK 394 699999965556******77**************999999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence
MEERDEYTES RTINKSAAVQ EAKASVEVEV LTSLANEQMH SAPNYLELGT IRDWTSKTGS 60 PDEEKPGVKQ NMEEDRKELG LGEAHRGLPE KSSQTISKLA DNDQDEAGNL LSSDKDTENL 120 ILPIEVETTA LLNECSEPPT EDNNKNYIEQ ANPPIEDSIQ NTSITNLNMV PDNSPEVGCK 180 DKRVLKSKKK NYILRSLISS DRVLRSRTQD KAKAPEPSND LSNVTAGEEG KGKKKNRKIK 240 GKGARVDEFS SIRNHLRYLV NRIKYEQSLI EAYSSEGWKG FSSDKLKPEK ELQRASNEIM 300 RRKLKIRDLF QRIDALCSEG RFSEALFDSE GQIDSEDIFC GKCGSKELSL ENDIILCDGV 360 CDRGFHQFCL EPPLLNSDIP PDDEGWLCPG CDCKDDCIDL LNEFQGSNLS ITDGWEKVFP 420 EAAAAAAGQS SDHTMSLPSD DSDDGDYDPD VPDAIDQDGE SRSDHSSSDQ SSSDLSSSDK 480 SGYASASASE ELEAPPNDDQ YLGLPSDDSE DDDYDPGAPV RDEGVGQESS SSDFTSDSED 540 LAALVDNGSS KDDNIASSPL NNTVPVRNSD GQSSGRGPNK NAQHNKLSSL VGSGPDEGGL 600 ELVSGRRHVE RLDYKKLHDE TFGNVPTDSS DDTYGSDSID SSDDRGRGRS TRKGSPKNPV 660 PALSRNGTDD LKNIKTKRSS KRTRQKPAAE NMDNSVTKTP EGTLKSSSSV RRTTSSSHRR 720 LSQPTLERLL ASFQENQYPE RATKESLARE LGLSLKQVSK WFENTRWSTR HPSSEANKAK 780 SASRMGTQSS QTSRKPPKPE QESGACFRDT CSNGAQHQES PKAISVVAPC QSGVTGDDKL 840 ANQKPKRPES AATKSRKRKG RSDQVASRSK DRKKSRKPPA KSSKVDEIQT ADKVKKRRRK 900 SM

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence

MEERDEYTES RTINKSAAVQ EAKASVEVEV LTSLANEQMH SAPNYLELGT IRDWTSKTGS  60
PDEEKPGVKQ NMEEDRKELG LGEAHRGLPE KSSQTISKLA DNDQDEAGNL LSSDKDTENL  120
ILPIEVETTA LLNECSEPPT EDNNKNYIEQ ANPPIEDSIQ NTSITNLNMV PDNSPEVGCK  180
DKRVLKSKKK NYILRSLISS DRVLRSRTQD KAKAPEPSND LSNVTAGEEG KGKKKNRKIK  240
GKGARVDEFS SIRNHLRYLV NRIKYEQSLI EAYSSEGWKG FSSDKLKPEK ELQRASNEIM  300
RRKLKIRDLF QRIDALCSEG RFSEALFDSE GQIDSEDIFC GKCGSKELSL ENDIILCDGV  360
CDRGFHQFCL EPPLLNSDIP PDDEGWLCPG CDCKDDCIDL LNEFQGSNLS ITDGWEKVFP  420
EAAAAAAGQS SDHTMSLPSD DSDDGDYDPD VPDAIDQDGE SRSDHSSSDQ SSSDLSSSDK  480
SGYASASASE ELEAPPNDDQ YLGLPSDDSE DDDYDPGAPV RDEGVGQESS SSDFTSDSED  540
LAALVDNGSS KDDNIASSPL NNTVPVRNSD GQSSGRGPNK NAQHNKLSSL VGSGPDEGGL  600
ELVSGRRHVE RLDYKKLHDE TFGNVPTDSS DDTYGSDSID SSDDRGRGRS TRKGSPKNPV  660
PALSRNGTDD LKNIKTKRSS KRTRQKPAAE NMDNSVTKTP EGTLKSSSSV RRTTSSSHRR  720
LSQPTLERLL ASFQENQYPE RATKESLARE LGLSLKQVSK WFENTRWSTR HPSSEANKAK  780
SASRMGTQSS QTSRKPPKPE QESGACFRDT CSNGAQHQES PKAISVVAPC QSGVTGDDKL  840
ANQKPKRPES AATKSRKRKG RSDQVASRSK DRKKSRKPPA KSSKVDEIQT ADKVKKRRRK  900
SM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	236	GKGKKKN
2	857	877	KRKGRSDQVASRSKDRKKSRK
3	871	878	DRKKSRKP
4	895	900	KKRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	5e-88	HB-PHD family protein