PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022942043.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 535aa    MW: 59682.3 Da    PI: 6.0264
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022942043.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.52.6e-931755343374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     e +++ A++++s+d++la+ +L+rl+++ +s++g+p+qR+a++f+eAL++ l+       +  + + +s+ + ++++ a+k+fs +sPi+ fsh+
  XP_022942043.1 175 EDIVRTADCFDSNDFQLAHVILERLNQRlQSSTGKPLQRAAFFFKEALQSLLSA------SNRHNRLSSWPEIVHTIRAYKVFSAISPIPMFSHF 263
                     568899*********************99************************9......4555566666669********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     t+Nqa+lea++g++ +Hi+Dfdi+ G+Q++++++++a+++e+    pp lRiT+v+++e   + e + ++e+L +fA+ l+++f+++++  +++e
  XP_022942043.1 264 TTNQALLEALNGSSFIHIVDFDIGFGGQYASFMKEIAEKAESrkmiPPVLRITAVVPEE--FAIESRLIRENLCQFAQDLKIRFHIDLVPLRTFE 356
                     *************************************9996556679**********65..8889999********************9999*** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklprese 280
                     +l++++ ++ +gE+ a+ l  +++r l   +s++s + ++L+ v+ +sP vvv+v+ e  +d +++sF + ++++le+y+++++sl+a + +  +
  XP_022942043.1 357 TLSFKSVKFMEGEKAAILLTPAIFRRL---GSINS-IGSFLSDVRLVSPCVVVFVDGEgwSDSGAASFKRNLVDSLEFYAMMLESLDAAV-AGGD 446
                     ***************************...66666.777*******************77788999**********************98.5557 PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + + +E ++++++i  +v  +g++       +  Wre ++ aG++pv+ls++a  qa++ll kv+++g++v +++++lvl+W++rpLv++SaWr
  XP_022942043.1 447 WVRRIETFVFRPKILAAVEGAGRM------AAPPWREVFHGAGMRPVALSQFADFQAECLLGKVQVQGFQVGKRHAELVLCWHERPLVATSAWR 534
                     77889*************999998......799************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    
MXTIAIAPPP PTPTSTPNIT NPSYEPTSVL DLRRSPSPVA PDPHTLSSAP LLPTDDRPNN  60
NNNNNNPSLD WDEQTLHNLD WDSIMGDLGL HDDSNSAPKN PNPNPNPNPN PNPNNNNHVP  120
QFPDFLHSHP FDHQTHLVSP DFFLSEPPYS NHTPTFNSFD LAAPNSNNFS CEFLEDIVRT  180
ADCFDSNDFQ LAHVILERLN QRLQSSTGKP LQRAAFFFKE ALQSLLSASN RHNRLSSWPE  240
IVHTIRAYKV FSAISPIPMF SHFTTNQALL EALNGSSFIH IVDFDIGFGG QYASFMKEIA  300
EKAESRKMIP PVLRITAVVP EEFAIESRLI RENLCQFAQD LKIRFHIDLV PLRTFETLSF  360
KSVKFMEGEK AAILLTPAIF RRLGSINSIG SFLSDVRLVS PCVVVFVDGE GWSDSGAASF  420
KRNLVDSLEF YAMMLESLDA AVAGGDWVRR IETFVFRPKI LAAVEGAGRM AAPPWREVFH  480
GAGMRPVALS QFADFQAECL LGKVQVQGFQ VGKRHAELVL CWHERPLVAT SAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-160GRAS family protein