PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022941894.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 601aa MW: 66946.1 Da PI: 7.1505

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022941894.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	122	142	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C ff++ G C GdrC F Hgp XP_022941894.1 122 CIFFQK-GLCLKGDRCAFLHGP 142 ****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MVGGGPQVLE QPQQSLPQPL STAEEEAVKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV 60 NPRDCWFWLN GNCLNPKCSF RHPPLDGLVG TPHSTTPSSQ IPSQTSAIPS APVNSSKQAV 120 SCIFFQKGLC LKGDRCAFLH GPSPVPTNKV PLMATNGQAS EPPSVKKIAG GTQRSNQEQK 180 NPQEIFLKSV GDASVKLAMK DGSVPSKIGN INEKSRPPAK VADGGSRKGQ YGWDQRWTSS 240 EKLSLGSAQM ERRLSRKSIS PEHVQNVDLR HRLNKQRRGN GLRSVINNEN VGNRPEERNY 300 HASRRDSHPS QESSMSNRLR GRIKLPRIPS PVRSSNVGPE RDFNRGRSGG RLSPGRSLSL 360 SYQESSRDEM KGRLEVDYNN ERRNFNGLNS GRDGMDGTSD FAAPKRLAEL KGEKHVVSKE 420 KQTLGKRKGF DNDQPGVELS FEGPKSLSEI LRKKRQVKSA VDLPMNNAER ESSERLKERS 480 IIPSVEQGGR SSTSKQKANS LEGIVFAPVE TFGKEEENIN VTHHNSSQPI HSTDDHGIEA 540 YEETFEDPEY EGDDLRDGEY EYEEVDDREY NYEEGDNVVP EEEYMDDEDG DDFAKKIGVM 600 S

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MVGGGPQVLE QPQQSLPQPL STAEEEAVKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV  60
NPRDCWFWLN GNCLNPKCSF RHPPLDGLVG TPHSTTPSSQ IPSQTSAIPS APVNSSKQAV  120
SCIFFQKGLC LKGDRCAFLH GPSPVPTNKV PLMATNGQAS EPPSVKKIAG GTQRSNQEQK  180
NPQEIFLKSV GDASVKLAMK DGSVPSKIGN INEKSRPPAK VADGGSRKGQ YGWDQRWTSS  240
EKLSLGSAQM ERRLSRKSIS PEHVQNVDLR HRLNKQRRGN GLRSVINNEN VGNRPEERNY  300
HASRRDSHPS QESSMSNRLR GRIKLPRIPS PVRSSNVGPE RDFNRGRSGG RLSPGRSLSL  360
SYQESSRDEM KGRLEVDYNN ERRNFNGLNS GRDGMDGTSD FAAPKRLAEL KGEKHVVSKE  420
KQTLGKRKGF DNDQPGVELS FEGPKSLSEI LRKKRQVKSA VDLPMNNAER ESSERLKERS  480
IIPSVEQGGR SSTSKQKANS LEGIVFAPVE TFGKEEENIN VTHHNSSQPI HSTDDHGIEA  540
YEETFEDPEY EGDDLRDGEY EYEEVDDREY NYEEGDNVVP EEEYMDDEDG DDFAKKIGVM  600
S